Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   C663_RS06140 Genome accession   NC_020244
Coordinates   1210629..1211582 (+) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus subtilis XF-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205629..1216582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS06115 (C663_1152) argF 1207460..1208419 (+) 960 WP_015383338.1 ornithine carbamoyltransferase -
  C663_RS06120 (C663_1153) yjzC 1208505..1208684 (+) 180 WP_003245356.1 YjzC family protein -
  C663_RS06125 yjzD 1208730..1208915 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  C663_RS06130 (C663_1155) - 1209166..1209900 (+) 735 WP_015483082.1 hypothetical protein -
  C663_RS06135 (C663_1156) - 1209982..1210539 (+) 558 WP_015383340.1 hypothetical protein -
  C663_RS06140 (C663_1157) med 1210629..1211582 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  C663_RS06145 (C663_1158) comZ 1211597..1211788 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  C663_RS06150 (C663_1159) yjzB 1211818..1212054 (-) 237 WP_015383342.1 spore coat protein YjzB -
  C663_RS06155 fabH 1212219..1213157 (+) 939 WP_041517801.1 beta-ketoacyl-ACP synthase III -
  C663_RS06160 (C663_1161) fabF 1213180..1214421 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  C663_RS06165 (C663_1162) yjaZ 1214497..1215282 (+) 786 WP_015383343.1 DUF2268 domain-containing protein -
  C663_RS06170 (C663_1163) appD 1215475..1216461 (+) 987 WP_015383344.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=55987 C663_RS06140 WP_014476425.1 1210629..1211582(+) (med) [Bacillus subtilis XF-1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=55987 C663_RS06140 WP_014476425.1 1210629..1211582(+) (med) [Bacillus subtilis XF-1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997

Multiple sequence alignment