Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KDB76_RS24270 Genome accession   NZ_CP073661
Coordinates   5265157..5266527 (-) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas sp. JS425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5260157..5271527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDB76_RS24250 (KDB76_24250) - 5260381..5260578 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  KDB76_RS24255 (KDB76_24255) - 5260592..5262658 (-) 2067 WP_024087740.1 carbon starvation CstA family protein -
  KDB76_RS24260 (KDB76_24260) - 5262837..5263199 (+) 363 WP_038410145.1 PilZ domain-containing protein -
  KDB76_RS24265 (KDB76_24265) - 5263463..5264980 (+) 1518 WP_013974213.1 nucleobase:cation symporter-2 family protein -
  KDB76_RS24270 (KDB76_24270) radA 5265157..5266527 (-) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  KDB76_RS24275 (KDB76_24275) mscL 5266704..5267123 (+) 420 WP_013974214.1 large-conductance mechanosensitive channel protein MscL -
  KDB76_RS24280 (KDB76_24280) - 5267158..5267934 (-) 777 WP_023661108.1 ferredoxin--NADP reductase -
  KDB76_RS24285 (KDB76_24285) - 5268146..5268853 (+) 708 WP_013974216.1 autoinducer binding domain-containing protein -
  KDB76_RS24290 (KDB76_24290) - 5268950..5270074 (+) 1125 WP_013974217.1 methyltransferase -
  KDB76_RS24295 (KDB76_24295) - 5270191..5270346 (-) 156 WP_013974218.1 DUF2474 domain-containing protein -
  KDB76_RS24300 (KDB76_24300) cydB 5270356..5271363 (-) 1008 WP_013974219.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=559809 KDB76_RS24270 WP_003251626.1 5265157..5266527(-) (radA) [Pseudomonas sp. JS425]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=559809 KDB76_RS24270 WP_003251626.1 5265157..5266527(-) (radA) [Pseudomonas sp. JS425]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGTAGCGGCCGTGCTGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGTTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGCAAATCGAC
CATCCTGCTGCAGACCTTGTGCAACATTGCGGTGGGCATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGTATCGAGACCATCATC
GCCACGGCTCGCGTCGAAAAACCGCGGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCCGGCGGTGTGGCCCAGGTGCGCGAAAGTACGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTCGCCGGCCCGCGGGTACTCGAGCACATGGTCGATACCGTGCTGTATTTC
GAGGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCAGTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGTGTGTT
CGGCATGACCGACCGGGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACCTT
GCCAACCCGCGCCGGGTGACCTTGGGCCTTGACCAGAATCGCCTGGCCATGTTGCTGGCAGTGCTGCACCGCCACGGCGG
TATTCCCACCCATGACCAAGACGTGTTCCTCAACGTGGTGGGTGGGGTGAAGGTGCTGGAAACCGCCTCGGACCTGGCGT
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCCTGGCCCATGGCCTGCTGGTGTTTGGCGAGATCGGCCTGTCT
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGTTTGAAGGAGGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGGCTCCGGCCGGGTTGCAGGTGATTGCCGTTACCCGGCTGGAGCAGGCTTTGGATGCGT
TGTTCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461