Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SCSC_RS06630 Genome accession   NZ_AP014647
Coordinates   1367006..1367959 (+) Length   317 a.a.
NCBI ID   WP_006269745.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362006..1372959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS06610 (SCSC_1357) - 1364073..1364765 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SCSC_RS06615 (SCSC_1358) - 1364903..1365364 (-) 462 WP_003035860.1 Fur family transcriptional regulator -
  SCSC_RS06620 (SCSC_1359) - 1365533..1365808 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SCSC_RS06625 (SCSC_1360) - 1365937..1366770 (-) 834 WP_006269763.1 DegV family protein -
  SCSC_RS06630 (SCSC_1361) ceuB 1367006..1367959 (+) 954 WP_006269745.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  SCSC_RS06635 (SCSC_1362) - 1367952..1368914 (+) 963 WP_006269749.1 iron chelate uptake ABC transporter family permease subunit -
  SCSC_RS06640 (SCSC_1363) - 1368915..1369667 (+) 753 WP_006269739.1 ATP-binding cassette domain-containing protein -
  SCSC_RS06645 (SCSC_1364) - 1369689..1370660 (+) 972 WP_003068226.1 siderophore ABC transporter substrate-binding protein -
  SCSC_RS06650 (SCSC_1365) - 1370723..1371454 (-) 732 WP_006269744.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35351.20 Da        Isoelectric Point: 10.0791

>NTDB_id=55977 SCSC_RS06630 WP_006269745.1 1367006..1367959(+) (ceuB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQTVTQNHFAAPST
IGTVNAAKFGMLLSLFFFPTANLAQKMLFAFVSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISAAAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIIPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=55977 SCSC_RS06630 WP_006269745.1 1367006..1367959(+) (ceuB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTCAGTGGTGAGACTAACACTTGGCTATTATTTTTAGAGTCGCGCTTACCAAGGACTATTAGTATCA
TTTTAGCAGGATCTAGCATGAGTATTGCGGGACTTCTGATGCAAACTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATGCTTCTCAGCCTCTTCTTCTTTCCAACGGCGAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTGTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTTAAGGAAAAAT
GGTTACTGCCACTTGTCGGAATTATTTATAGTGGTGTCATTAGCGCAGCTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATTATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTGGGC
TCGCTTCCTTTCATAGGCGTGATTATACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGTATCAAAAGTAT
TACTGCCCTGACGGGAGCAGGCTTAATTTTAATCTGTGATATTATGTCACGTATGGTGATCCGTCCCTATGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

38.141

98.423

0.375

Multiple sequence alignment