Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KEC47_RS12600 Genome accession   NZ_CP073656
Coordinates   2642498..2643250 (-) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y816     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2637498..2648250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC47_RS12575 (KEC47_12575) mreC 2637934..2638797 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  KEC47_RS12580 (KEC47_12580) mreB 2638828..2639841 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KEC47_RS12585 (KEC47_12585) radC 2639933..2640628 (-) 696 WP_007408165.1 DNA repair protein RadC -
  KEC47_RS12590 (KEC47_12590) - 2640660..2641229 (-) 570 WP_070082167.1 Maf family protein -
  KEC47_RS12595 (KEC47_12595) - 2641370..2642371 (-) 1002 WP_070082168.1 SPOR domain-containing protein -
  KEC47_RS12600 (KEC47_12600) comC 2642498..2643250 (-) 753 WP_071181911.1 A24 family peptidase Machinery gene
  KEC47_RS12605 (KEC47_12605) - 2643390..2644682 (-) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KEC47_RS12610 (KEC47_12610) - 2644741..2647383 (-) 2643 WP_060674740.1 valine--tRNA ligase -
  KEC47_RS12615 (KEC47_12615) - 2647836..2648027 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=559749 KEC47_RS12600 WP_071181911.1 2642498..2643250(-) (comC) [Bacillus velezensis strain Y816]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=559749 KEC47_RS12600 WP_071181911.1 2642498..2643250(-) (comC) [Bacillus velezensis strain Y816]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584