Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KEC47_RS01790 Genome accession   NZ_CP073656
Coordinates   364090..364527 (-) Length   145 a.a.
NCBI ID   WP_029325718.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y816     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359090..369527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC47_RS19095 - 359677..359835 (-) 159 Protein_308 molybdopterin dinucleotide binding domain-containing protein -
  KEC47_RS01760 (KEC47_01760) - 359950..361152 (+) 1203 WP_176283107.1 GTP-binding protein -
  KEC47_RS01765 (KEC47_01765) - 361217..362353 (+) 1137 WP_176283108.1 zinc-dependent alcohol dehydrogenase -
  KEC47_RS01770 (KEC47_01770) - 362368..362802 (+) 435 WP_021494203.1 RDD family protein -
  KEC47_RS01775 (KEC47_01775) - 362875..363195 (+) 321 WP_015388719.1 YckD family protein -
  KEC47_RS01780 (KEC47_01780) - 363409..363627 (+) 219 Protein_313 family 1 glycosylhydrolase -
  KEC47_RS01785 (KEC47_01785) nin/comJ 363670..364068 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  KEC47_RS01790 (KEC47_01790) nucA/comI 364090..364527 (-) 438 WP_029325718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KEC47_RS01795 (KEC47_01795) hxlB 364886..365443 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  KEC47_RS01800 (KEC47_01800) hxlA 365440..366075 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  KEC47_RS01805 (KEC47_01805) - 366307..366669 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.31 Da        Isoelectric Point: 7.9203

>NTDB_id=559702 KEC47_RS01790 WP_029325718.1 364090..364527(-) (nucA/comI) [Bacillus velezensis strain Y816]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCQQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=559702 KEC47_RS01790 WP_029325718.1 364090..364527(-) (nucA/comI) [Bacillus velezensis strain Y816]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGATAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTCAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634