Detailed information NTG0559639

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSYCIT7_RS03630
• Genome accession: NZ_CP073636
• Coordinates: 827187..828059 (-)
• Length: 290 a.a.
• NCBI ID: WP_003430731.1
• Uniprot ID: A0A8T8LZ52
• Organism: Pseudomonas syringae Cit 7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 822187..833059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYCIT7_RS03600 (PSYCIT7_003600)	-	822522..823151 (-)	630	WP_003345130.1	DUF1780 domain-containing protein	-
PSYCIT7_RS03605 (PSYCIT7_003605)	-	823279..823746 (+)	468	WP_003371252.1	hypothetical protein	-
PSYCIT7_RS03610 (PSYCIT7_003610)	-	824186..825658 (+)	1473	WP_003430733.1	tetratricopeptide repeat protein	-
PSYCIT7_RS03615 (PSYCIT7_003615)	-	825764..826222 (+)	459	WP_003371256.1	hypothetical protein	-
PSYCIT7_RS03620 (PSYCIT7_003620)	yacG	826361..826570 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
PSYCIT7_RS03625 (PSYCIT7_003625)	coaE	826567..827190 (-)	624	WP_003350248.1	dephospho-CoA kinase	-
PSYCIT7_RS03630 (PSYCIT7_003630)	pilD	827187..828059 (-)	873	WP_003430731.1	A24 family peptidase	Machinery gene
PSYCIT7_RS03635 (PSYCIT7_003635)	pilC	828061..829278 (-)	1218	WP_003371261.1	type II secretion system F family protein	Machinery gene
PSYCIT7_RS03640 (PSYCIT7_003640)	pilB	829281..830975 (-)	1695	WP_003430729.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSYCIT7_RS03645 (PSYCIT7_003645)	-	831202..831636 (+)	435	WP_003371267.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PSYCIT7_RS03650 (PSYCIT7_003650)	-	831887..832099 (-)	213	Protein_721	winged helix-turn-helix transcriptional regulator	-
PSYCIT7_RS03655 (PSYCIT7_003655)	-	832147..832368 (+)	222	WP_003371270.1	glutathione binding-like protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32034.24 Da
• Isoelectric Point: 7.9034

>NTDB_id=559639 PSYCIT7_RS03630 WP_003430731.1 827187..828059(-) (pilD) [Pseudomonas syringae Cit 7]
MPLLDFLASSPLAFVITCCLLGLIVGSFLNVVVYRLPKMMEREWKAQSREMLGLPAEPDQPVFNLILPHSNCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISQRYPLVELTCAVLSAYVAWHFGFGWQAAAILVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=559639 PSYCIT7_RS03630 WP_003430731.1 827187..828059(-) (pilD) [Pseudomonas syringae Cit 7]
ATGCCCCTCCTCGATTTCCTGGCCAGCTCACCGCTGGCCTTCGTCATTACCTGCTGCCTACTCGGCCTCATCGTCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCCAAAATGATGGAGCGCGAATGGAAAGCCCAATCCCGCGAAATGCTCGGCC
TGCCCGCCGAACCCGATCAGCCAGTCTTCAATCTGATACTGCCGCACTCCAATTGCCCGCACTGCGCGCACAAAATCCGC
CCGTGGGAAAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGTAAATGTTCGCAGTGCAAAGCGCCGATCAGCCAACG
TTACCCGCTGGTCGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATACTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCCTTCGGGCTGTTCACCTCGCTGAACGATGCGCTGTGGGGAGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGTTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCTATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.596	95.517	0.531
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.704	97.931	0.497
pilD	Acinetobacter nosocomialis M2	50	97.931	0.49
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476