Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PSYCIT7_RS01505 Genome accession   NZ_CP073636
Coordinates   325985..328204 (-) Length   739 a.a.
NCBI ID   WP_003365984.1    Uniprot ID   -
Organism   Pseudomonas syringae Cit 7     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320985..333204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS01485 (PSYCIT7_001485) hslU 321313..322650 (-) 1338 WP_003365974.1 ATP-dependent protease ATPase subunit HslU -
  PSYCIT7_RS01490 (PSYCIT7_001490) hslV 322717..323247 (-) 531 WP_003392345.1 ATP-dependent protease subunit HslV -
  PSYCIT7_RS01495 (PSYCIT7_001495) - 323454..324149 (-) 696 WP_003432151.1 SPOR domain-containing protein -
  PSYCIT7_RS01500 (PSYCIT7_001500) argS 324151..325887 (-) 1737 WP_003432149.1 arginine--tRNA ligase -
  PSYCIT7_RS01505 (PSYCIT7_001505) priA 325985..328204 (-) 2220 WP_003365984.1 primosomal protein N' Machinery gene
  PSYCIT7_RS01510 (PSYCIT7_001510) rpmE 328374..328595 (+) 222 WP_002551648.1 50S ribosomal protein L31 -
  PSYCIT7_RS01515 (PSYCIT7_001515) - 328609..329412 (+) 804 WP_003365986.1 thermonuclease family protein -
  PSYCIT7_RS01520 (PSYCIT7_001520) - 329595..330863 (+) 1269 WP_003365988.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81870.19 Da        Isoelectric Point: 8.5462

>NTDB_id=559632 PSYCIT7_RS01505 WP_003365984.1 325985..328204(-) (priA) [Pseudomonas syringae Cit 7]
MPDAILRLALPSPLRRLFDYRAPAGVSRSALQPGMRLRVPFGRREMIGILVEVVDHSEVPADKLKPAIALLDSEAPLPPA
LFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAESRQERFWHVAPGASVDDPRIARAPKQREALTTLAQHPHGVAHQLL
SKLMLNKDSLNLLLAKELVYVEVRSHAPSARHEHWLAQPELPLNTEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNQRAGGAQQPRFMRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSGCQRCDARMTVHQRSGELRCHHCGYVERVPRQC
PSCGKVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFTTIQRGQPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLIQLTEQGYFAFAEQALSERRSAGLPPFSHL
ALLRAEAHKPGQAEAFLDQACSDAEQLVAQMALGGIELLGPVPAPMERRAGRYRAQLLVQSSARAPLHKLLATWLLALEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=559632 PSYCIT7_RS01505 WP_003365984.1 325985..328204(-) (priA) [Pseudomonas syringae Cit 7]
GTGCCCGACGCCATCCTGCGCCTTGCCCTGCCCTCGCCGCTTCGCCGCCTGTTCGACTACCGCGCCCCAGCGGGCGTGTC
GCGCAGCGCCTTGCAGCCGGGCATGCGTCTGCGAGTGCCGTTCGGACGCCGGGAAATGATCGGCATTCTGGTGGAAGTGG
TCGATCACAGCGAAGTGCCCGCCGACAAGCTCAAGCCGGCAATCGCCCTGCTCGACAGCGAAGCGCCGCTGCCACCTGCG
CTGTTCAAACTGTGCCTGTGGACCTCGCAGTATTACCAGCACAGCCTGGGCGACACGCTGAGCTGGGCCTTACCGGTGTT
GCTGCGTCAGGGCGAACTGGCCGAAAGCCGCCAGGAACGCTTCTGGCACGTTGCACCGGGTGCCAGCGTCGACGATCCGC
GCATCGCCCGCGCGCCCAAGCAGCGCGAGGCCCTGACCACCCTTGCCCAGCACCCGCACGGGGTGGCGCATCAACTGCTC
AGCAAGCTGATGCTCAACAAGGACAGCCTCAACCTGTTGCTGGCCAAGGAGCTGGTGTACGTCGAGGTCCGCAGCCATGC
GCCCAGCGCACGCCATGAACACTGGCTGGCCCAGCCTGAATTGCCGCTCAACACCGAACAACGCGCCGCTTACGAAGCGA
TCCGCGCCGGGTTCGACAGCTTTCATGCGTTCCTGCTGGCCGGCGTCACCGGCAGCGGCAAGACCGAAGTCTATCTGCAA
CTGATCCGCGAGACCCTCGAGGCGGGCAAGCAGGCGCTGGTGCTGATCCCGGAAATCAACCTCGGCCCGCAGACCCTGGC
GCGCTTCGAGCAGCGCTTCAATGCGCGCATTGCGCTGGTCCACTCGGCGGTCAACGACCGCGAACGGCTGGATGCCTGGC
TGGCGGCTCGCGATGGCGAGGCGGACATCATCATCGGCACGCGTTCGGCGCTGTTCACGCCGATGAAAAACCCCGGGCTG
ATCATCATCGACGAGGAACACGACGGCTCCTATAAACAGCAGGAAGGTCTGCGCTATCACGCCCGCGATCTGGCCCTGGT
GCGGGCGCGTCAGGAAAACATTCCGATTGTCCTGGGCTCGGCCACTCCGTCCCTGGAAAGCCTGCATAACGCCTACACTG
GCCGCTACGGCCTGCTGCGCCTGAATCAGCGCGCGGGCGGCGCACAGCAGCCGCGTTTCATGCGCCTGGACGTCAAGAGC
CGACCGCTGGACAGCGGCATCTCCGGGCCCATGCAGCAGGCCATCGGTCAGACGCTCGCGGCAGGCCAGCAGGTCTTGGT
GTTCCTCAACCGTCGCGGCTTTGCACCCACCTTGCTGTGCCACGACTGCGGGTGGATGTCCGGCTGCCAGCGCTGCGATG
CACGCATGACCGTGCACCAGCGCTCGGGCGAACTGCGCTGCCATCACTGCGGGTATGTCGAGCGTGTACCGCGCCAGTGT
CCGTCGTGCGGCAAGGTGGATTTGCGCCCGGTAGGCGCCGGCACCGAGCGCGCCGAAGAGCGCCTGGCGATTCTGTTTCC
GGACTACCCCGTGCTGCGTGTCGACCGCGACAGCACGTCGCGCAAGGACGCCATGAACCAGCTGTTCACGACGATCCAGC
GCGGCCAGCCATGCATTCTGGTCGGCACGCAAATGCTCGCCAAGGGCCATCACTTTCCCCGGGTCACGCTGGTATCGATT
CTGGACGCCGACGGCGGGCTGTTTTCCGGCGACTTTCGCGCCAGCGAGCGCATGGCGCAACTGATCGTTCAGGTGGCAGG
CCGTGCCGGGCGCGCCGAAGAACCTGGCAAGGTGATCATCCAGACCCACCTGGCCGACCATCCACTGCTGATTCAGCTGA
CCGAGCAGGGTTATTTCGCCTTTGCCGAACAGGCCTTGAGCGAGCGCCGTTCGGCGGGTCTGCCACCGTTTTCACACCTC
GCACTGCTGCGCGCCGAAGCGCACAAGCCGGGACAGGCCGAGGCCTTTCTCGATCAGGCCTGCAGCGATGCGGAGCAACT
GGTTGCGCAGATGGCGCTGGGCGGCATTGAGCTGCTGGGCCCGGTTCCGGCACCGATGGAACGCCGCGCCGGACGTTATC
GCGCGCAGTTGCTGGTGCAGTCCAGCGCCCGTGCGCCCTTGCATAAATTGCTTGCCACCTGGCTGCTCGCGCTGGAGCAA
ATGCCCAGCGGCCGGCAGGTCAGATGGTCGCTGGATGTGGATCCTGTGGATCTTTATTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

DEAD/DEAH box helicase (DEAD)

(207-367)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.844

100

0.48