Detailed information NTG0559624

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KEF49_RS17920
• Genome accession: NZ_CP073635
• Coordinates: 3531435..3532580 (+)
• Length: 381 a.a.
• NCBI ID: WP_212099667.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Ba13
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3526435..3537580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEF49_RS17900 (KEF49_17900)	argS	3527078..3528748 (-)	1671	WP_065982573.1	arginine--tRNA ligase	-
KEF49_RS17905 (KEF49_17905)	-	3528745..3529173 (-)	429	WP_212099662.1	DUF1934 domain-containing protein	-
KEF49_RS17910 (KEF49_17910)	-	3529326..3529805 (+)	480	Protein_3499	bacteriocin biosynthesis protein AlbG	-
KEF49_RS17915 (KEF49_17915)	-	3529811..3531205 (-)	1395	WP_212099664.1	YncE family protein	-
KEF49_RS17920 (KEF49_17920)	rapF	3531435..3532580 (+)	1146	WP_212099667.1	tetratricopeptide repeat protein	Regulator
KEF49_RS17925 (KEF49_17925)	-	3532564..3532683 (+)	120	WP_115996635.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
KEF49_RS17930 (KEF49_17930)	speB	3532817..3533689 (-)	873	WP_065522437.1	agmatinase	-
KEF49_RS17935 (KEF49_17935)	speE	3533748..3534578 (-)	831	WP_013353957.1	spermidine synthase	-
KEF49_RS17940 (KEF49_17940)	-	3534778..3536850 (+)	2073	WP_212099672.1	transglycosylase domain-containing protein	-
KEF49_RS17945 (KEF49_17945)	-	3536875..3537312 (-)	438	WP_212099675.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45726.04 Da
• Isoelectric Point: 5.0586

>NTDB_id=559624 KEF49_RS17920 WP_212099667.1 3531435..3532580(+) (rapF) [Bacillus amyloliquefaciens strain Ba13]
MASVVSSSAAGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKNGENYSIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELDQQPQLMGRTLFNIALCHNNQNNKDK
AIPHLKKAIDVFEKAQMIHSLPQPYFLLTQIYYKLENIDNAYDYHKKGVSICKEIDDIIYEEKFKFLEYLYTPNPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=559624 KEF49_RS17920 WP_212099667.1 3531435..3532580(+) (rapF) [Bacillus amyloliquefaciens strain Ba13]
GTGGCGAGTGTTGTATCGTCTTCAGCGGCTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGAGCATGCAGAGGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCGGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTTTCA
ATGGACTATGCGCGGCAAGCTTATTTAATTTATAAAAATGGGGAGAATTATAGCATTAGGTTGACTCAGTGCCATTCTTT
GTTTGGCGCTAATTATCTTGATGTAAAGCAATATGATCATGCGATATCCCACTTTCAAAAAGCATATACGATGGCTGAAC
TGGATCAGCAGCCTCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGATAAA
GCTATTCCTCATTTAAAAAAAGCCATAGATGTTTTTGAAAAAGCTCAAATGATTCACTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTATAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTGTCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAGAAATTTAAATTTTTGGAATATTTATACACGCCGAATCCAAGAGATATATTAATA
AATGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCTCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (223-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.554	100	0.696
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535