Detailed information NTG0055960

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SCSC_RS04175
• Genome accession: NZ_AP014647
• Coordinates: 843643..844755 (+)
• Length: 370 a.a.
• NCBI ID: WP_003031450.1
• Uniprot ID: A0A380L3U2
• Organism: Streptococcus constellatus subsp. constellatus strain CCUG 24889
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 838643..849755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCSC_RS04155 (SCSC_0860)	-	840543..840881 (+)	339	WP_003069168.1	ATP cone domain-containing protein	-
SCSC_RS04160 (SCSC_0861)	rpsU	841043..841219 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
SCSC_RS04165 (SCSC_0862)	mscL	841333..841710 (-)	378	WP_006269480.1	large conductance mechanosensitive channel protein MscL	-
SCSC_RS04170 (SCSC_0863)	dnaG	841865..843640 (+)	1776	WP_006269558.1	DNA primase	-
SCSC_RS04175 (SCSC_0864)	rpoS	843643..844755 (+)	1113	WP_003031450.1	RNA polymerase sigma factor RpoD	Regulator
SCSC_RS04180 (SCSC_0865)	-	844774..845103 (+)	330	WP_003069160.1	metal-sulfur cluster assembly factor	-
SCSC_RS04185 (SCSC_0866)	brnQ	845246..846574 (+)	1329	WP_006269526.1	branched-chain amino acid transport system II carrier protein	-
SCSC_RS04190 (SCSC_0867)	ccdA2	846715..847425 (+)	711	WP_003069152.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SCSC_RS04195 (SCSC_0868)	-	847442..848026 (+)	585	WP_006269481.1	redoxin family protein	-
SCSC_RS04200 (SCSC_0869)	msrB	848039..849148 (+)	1110	WP_006269564.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42396.02 Da
• Isoelectric Point: 4.4553

>NTDB_id=55960 SCSC_RS04175 WP_003031450.1 843643..844755(+) (rpoS) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=55960 SCSC_RS04175 WP_003031450.1 843643..844755(+) (rpoS) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAGATCAATGATCAATTAGTCATTCCATTTACTTTAAATGCTGATGGTATTGAGGATCTTCTTCAAC
GAATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTCTTAAATACAGAGGAAGAAGAA
GCTGAATTAACAGATGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTAAACGACCCTGTCCGTATGTATTTAAAGGAAAT
TGGTGTTGTTCCGCTGTTGACCAATGAAGAAGAGCAAGAATTAGCTGTTCTCGTGGAACAAGGCGATTTAGAAGCCAAGC
AACGTTTGGCGGAAGCTAATTTGCGGTTGGTCGTTTCCATCGCTAAGCGCTATGTTGGGCGTGGCATGCAGTTTCTTGAC
TTGATTCAAGAAGGAAATATGGGATTGATGAAAGCTGTTGATAAGTTTGACTATACTAAAGGTTTCAAATTTTCAACATA
TGCTACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCCGATCAAGCTCGTACAATTCGAATTCCGGTTCATATGG
TCGAAACAATCAATAAATTAGTACGGGAACAACGCAATCTTTTGCAGGAATTGGGGCAAGATCCAACGCCAGAGCAAATT
GCAGAGCGGATGGACATGACGCCTGATAAAGTCCGTGAAATTTTGAAGATTGCACAAGAACCTGTTTCTCTTGAAACACC
AATTGGAGAGGAAGATGATAGTCATTTGGGTGATTTCATTGAGGATGAGGTTATTGAAAATCCAGTTGATTATACAACGC
GTATCGTTTTGCGTGAGCAATTAGATGAAGTTCTTGATACATTAACAGACCGTGAAGAAAATGTGCTGCGTCTGCGTTTT
GGGCTAGATGATGGGAAAATGCGTACACTGGAAGATGTTGGAAAAGTATTTAACGTAACTCGTGAACGGATTCGACAAAT
TGAGGCTAAAGCCCTGCGCAAATTGCGTCATCCAAGTCGTAGCAAACCGCTTCGTGACTTTATTGAGGATTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

3D structure

• AlphaFold DB: A0A380L3U2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37