Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KEF49_RS10605 Genome accession   NZ_CP073635
Coordinates   2147912..2148520 (+) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142912..2153520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS10565 (KEF49_10565) - 2143982..2144488 (-) 507 WP_013352638.1 PTS glucose transporter subunit IIA -
  KEF49_RS10570 (KEF49_10570) - 2144625..2145038 (+) 414 WP_081309503.1 Hsp20/alpha crystallin family protein -
  KEF49_RS10575 (KEF49_10575) - 2145068..2145493 (-) 426 WP_065981740.1 YppG family protein -
  KEF49_RS10580 (KEF49_10580) - 2145678..2145860 (+) 183 WP_003153532.1 YppF family protein -
  KEF49_RS10585 (KEF49_10585) - 2145899..2146267 (-) 369 WP_212098276.1 YppE family protein -
  KEF49_RS10590 (KEF49_10590) - 2146313..2146558 (-) 246 WP_045511092.1 DUF5446 family protein -
  KEF49_RS10595 (KEF49_10595) sspM 2146761..2146865 (+) 105 WP_212098278.1 acid-soluble spore protein SspM -
  KEF49_RS10600 (KEF49_10600) - 2146908..2147870 (-) 963 WP_212098280.1 DUF2515 domain-containing protein -
  KEF49_RS10605 (KEF49_10605) recU 2147912..2148520 (+) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  KEF49_RS10610 (KEF49_10610) - 2148559..2151342 (+) 2784 WP_212098282.1 PBP1A family penicillin-binding protein -
  KEF49_RS10615 (KEF49_10615) - 2151421..2151912 (-) 492 WP_212098284.1 YpoC family protein -
  KEF49_RS10620 (KEF49_10620) nth 2151909..2152568 (-) 660 WP_016939068.1 endonuclease III -
  KEF49_RS10625 (KEF49_10625) dnaD 2152587..2153285 (-) 699 WP_013352649.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=559589 KEF49_RS10605 WP_014470057.1 2147912..2148520(+) (recU) [Bacillus amyloliquefaciens strain Ba13]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=559589 KEF49_RS10605 WP_014470057.1 2147912..2148520(+) (recU) [Bacillus amyloliquefaciens strain Ba13]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AATAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886