Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KEF49_RS05070 Genome accession   NZ_CP073635
Coordinates   1031689..1032267 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1026689..1037267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS05050 (KEF49_05050) - 1027191..1028483 (-) 1293 WP_212100851.1 globin-coupled sensor protein -
  KEF49_RS05055 (KEF49_05055) - 1028606..1030129 (-) 1524 WP_065981107.1 FAD-dependent oxidoreductase -
  KEF49_RS05060 (KEF49_05060) - 1030253..1031110 (+) 858 WP_065981108.1 SDR family oxidoreductase -
  KEF49_RS05065 (KEF49_05065) - 1031140..1031373 (-) 234 WP_065981109.1 IDEAL domain-containing protein -
  KEF49_RS05070 (KEF49_05070) comK 1031689..1032267 (+) 579 WP_013351744.1 competence protein ComK Regulator
  KEF49_RS05075 (KEF49_05075) - 1032412..1032783 (+) 372 WP_115997917.1 iron chaperone -
  KEF49_RS05080 (KEF49_05080) - 1032831..1034042 (-) 1212 WP_212100854.1 GNAT family N-acetyltransferase -
  KEF49_RS05085 (KEF49_05085) - 1034196..1034906 (-) 711 WP_065981112.1 YrpD family protein -
  KEF49_RS05090 (KEF49_05090) - 1035102..1035371 (+) 270 WP_065981113.1 excalibur calcium-binding domain-containing protein -
  KEF49_RS05095 (KEF49_05095) - 1035403..1035720 (-) 318 WP_003155166.1 YbjQ family protein -
  KEF49_RS05100 (KEF49_05100) - 1035762..1037231 (-) 1470 WP_212100857.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=559570 KEF49_RS05070 WP_013351744.1 1031689..1032267(+) (comK) [Bacillus amyloliquefaciens strain Ba13]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=559570 KEF49_RS05070 WP_013351744.1 1031689..1032267(+) (comK) [Bacillus amyloliquefaciens strain Ba13]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCCAAGCGGCAAGAATTCATGCTGTACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTACGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828