Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KEM15_RS08800 Genome accession   NZ_CP073632
Coordinates   1707218..1707931 (-) Length   237 a.a.
NCBI ID   WP_217374276.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702218..1712931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08780 (KEM15_08645) trxA 1702958..1703272 (-) 315 WP_130554392.1 thioredoxin -
  KEM15_RS08785 (KEM15_08650) - 1703533..1705866 (-) 2334 WP_274504293.1 endonuclease MutS2 -
  KEM15_RS08790 (KEM15_08655) - 1706298..1706846 (-) 549 WP_130554394.1 CvpA family protein -
  KEM15_RS08795 (KEM15_08660) - 1706843..1707160 (-) 318 WP_130554395.1 hypothetical protein -
  KEM15_RS08800 (KEM15_08665) treR 1707218..1707931 (-) 714 WP_217374276.1 trehalose operon repressor Regulator
  KEM15_RS08805 (KEM15_08670) treP 1708162..1710162 (+) 2001 WP_274504294.1 PTS system trehalose-specific EIIBC component -
  KEM15_RS08810 (KEM15_08675) treC 1710241..1711863 (+) 1623 WP_274504295.1 alpha,alpha-phosphotrehalase -
  KEM15_RS08815 (KEM15_08680) - 1711914..1712207 (+) 294 WP_274504296.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27602.58 Da        Isoelectric Point: 6.7439

>NTDB_id=559531 KEM15_RS08800 WP_217374276.1 1707218..1707931(-) (treR) [Streptococcus parasuis strain NN1]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKHELLNFPISGLT
SYQELTDALQLQSDTTVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=559531 KEM15_RS08800 WP_217374276.1 1707218..1707931(-) (treR) [Streptococcus parasuis strain NN1]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACACGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAACGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCAAAGATGGATAAAGAAATCGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAGGCGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGATTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502