Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   KEM15_RS08540 Genome accession   NZ_CP073632
Coordinates   1653293..1654027 (-) Length   244 a.a.
NCBI ID   WP_217374246.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648293..1659027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08515 (KEM15_08385) - 1649231..1650085 (-) 855 WP_217374243.1 helix-turn-helix domain-containing protein -
  KEM15_RS08520 (KEM15_08390) rpmB 1650386..1650574 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  KEM15_RS08525 (KEM15_08395) trmB 1650777..1651415 (-) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  KEM15_RS08530 (KEM15_08400) - 1651412..1652206 (-) 795 WP_217374244.1 phosphotransferase family protein -
  KEM15_RS08535 (KEM15_08405) - 1652256..1653296 (-) 1041 WP_274504273.1 ABC transporter permease -
  KEM15_RS08540 (KEM15_08410) pptA 1653293..1654027 (-) 735 WP_217374246.1 ABC transporter ATP-binding protein Regulator
  KEM15_RS08545 (KEM15_08415) - 1654090..1654503 (+) 414 WP_217374247.1 HIT family protein -
  KEM15_RS08550 (KEM15_08420) - 1654505..1654810 (+) 306 WP_274504274.1 chemotaxis protein -
  KEM15_RS08555 (KEM15_08425) - 1654948..1656123 (-) 1176 WP_274504275.1 LCP family protein -
  KEM15_RS08560 (KEM15_08430) - 1656120..1656647 (-) 528 WP_217374250.1 GNAT family N-acetyltransferase -
  KEM15_RS08565 (KEM15_08435) tsaE 1656640..1657080 (-) 441 WP_217375192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  KEM15_RS08570 (KEM15_08440) - 1657186..1658850 (-) 1665 WP_217374251.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27065.41 Da        Isoelectric Point: 4.6053

>NTDB_id=559530 KEM15_RS08540 WP_217374246.1 1653293..1654027(-) (pptA) [Streptococcus parasuis strain NN1]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLTVFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPIAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=559530 KEM15_RS08540 WP_217374246.1 1653293..1654027(-) (pptA) [Streptococcus parasuis strain NN1]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGGTTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATAATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTATAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTCCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.711

97.951

0.693
  pptA Streptococcus thermophilus LMD-9

69.456

97.951

0.68