Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SCSC_RS03410 Genome accession   NZ_AP014647
Coordinates   691653..693887 (+) Length   744 a.a.
NCBI ID   WP_006270565.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 686653..698887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS03380 (SCSC_0699) - 687447..688076 (+) 630 WP_006270521.1 hypothetical protein -
  SCSC_RS03385 (SCSC_0700) rnz 688087..689016 (+) 930 WP_006270578.1 ribonuclease Z -
  SCSC_RS03390 (SCSC_0701) - 689049..689657 (+) 609 Protein_648 histidine phosphatase family protein -
  SCSC_RS03395 (SCSC_0702) - 689667..690422 (+) 756 WP_006270561.1 SDR family oxidoreductase -
  SCSC_RS03400 (SCSC_0703) - 690432..691163 (+) 732 WP_006270551.1 class I SAM-dependent methyltransferase -
  SCSC_RS03405 (SCSC_0704) - 691147..691554 (+) 408 WP_006270584.1 GNAT family N-acetyltransferase -
  SCSC_RS03410 (SCSC_0705) recJ 691653..693887 (+) 2235 WP_006270565.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SCSC_RS03415 (SCSC_0706) - 694034..694828 (-) 795 WP_006270589.1 hypothetical protein -
  SCSC_RS03420 (SCSC_0707) - 694850..695545 (-) 696 WP_006270572.1 ABC transporter ATP-binding protein -
  SCSC_RS03425 (SCSC_0708) - 695549..695914 (-) 366 WP_006270580.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83489.60 Da        Isoelectric Point: 4.5198

>NTDB_id=55953 SCSC_RS03410 WP_006270565.1 691653..693887(+) (recJ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MITSKYDWQIATNFSDEDFIKKAKKLGLETSVANLVYQRGIQTEEALRDFLEASLDKLHNPYELHDMEKAVVRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQSDELNEETVGFQIAPRLNALGRLDDPNPAIELLTGFYEEEARDIALMINQKN
DERKEMVQHIYDEAKVMIDPEKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLDVSRLEELSQVLEAYIEDNQVDLSTKNELFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQASAVLEVVAFGLGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLMDARVD
GIQLFNIRGKNARLPENVPILRFSGEIPDLKKSRAVVVYDLPEHLNQLKAIIQQGNFEAIYFKNEIVQPYYLTGFGTKEQ
FAKLYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELGFVTIQDGVMQVNKNAEKKAIESSHIYQELKITVKE
QELMALGTVQEIYDYLIEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=55953 SCSC_RS03410 WP_006270565.1 691653..693887(+) (recJ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGACTTTATTAAAAAAGCTAAAAAACTGGG
CTTGGAGACTTCGGTAGCTAATTTAGTCTACCAGAGAGGTATCCAGACAGAAGAAGCACTGCGAGACTTTCTAGAAGCTA
GTTTAGACAAGCTACACAATCCTTATGAACTTCATGATATGGAGAAGGCGGTAGTACGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGCGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCGTTAGAACA
ATTGGGAGCGGAGTGTCAAGTCTATTTACCCAATCGATTTACAGATGGTTATGGACCTAATGCTAGTGTTTACAAGTATT
TTATTGAAAATCAAGAAGTCTCACTCATTATTACAGTGGACAATGGTGTTGCAGGACATGAAGCAATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCGTAACAGATCACCACTCTATGCCTGAGGAGCTGCCAAATGCCTATGCTATCGTCCATCC
GGAACATAGCGGAGCAGATTACCCTTTCAAGCATCTGGCTGGCTGTGGGGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAGTGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTGTCTGTTTTGAAAAACACTCAGCGCATCGGCTTGCAAGAACTTTTCAAAATAGCAGGTAT
ACAGTCTGACGAGCTGAACGAAGAAACAGTTGGTTTTCAAATAGCCCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CCAATCCTGCTATTGAACTTCTGACCGGCTTTTATGAAGAAGAAGCGCGTGACATTGCCCTGATGATTAATCAGAAAAAT
GACGAGCGCAAGGAGATGGTGCAGCATATTTATGATGAAGCTAAGGTTATGATTGATCCTGAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTGCATCAGCCGATCATTG
TGCTGAATATTGAAAATGGTTTAGCCAAAGGTAGTGCTCGCAGCATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCAGGGGCAGCCGGCATGACTCTTGACGTCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGGAGGCTTATATTGAAGATAATCAAGTTGATTTGTCAACTAAGAATGAACTCTTTTTGGATGAAGAAT
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATGGATAATAAAAAACCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTACCATGGGGGCAGGAAATGCGCACCTTAAGCTGAAAATTTC
TCAGGCTAGCGCAGTTCTTGAAGTAGTGGCTTTTGGTCTAGGTGAGCTTGCGACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAGTGGAATGGTCAGACTAGCCTCCAGCTTATGCTGATGGATGCGAGGGTCGAT
GGAATTCAGCTTTTTAATATCCGAGGTAAAAATGCTCGCTTACCTGAAAATGTTCCTATTTTACGTTTTTCAGGAGAAAT
TCCTGATTTGAAAAAGAGCAGAGCAGTTGTAGTGTATGACTTACCTGAGCACCTAAATCAGCTCAAAGCAATTATTCAAC
AGGGCAATTTTGAAGCAATTTACTTTAAAAATGAGATTGTTCAGCCCTATTATTTGACAGGTTTCGGAACAAAAGAGCAG
TTTGCTAAACTCTATAAAACGATTTATCAGTTTCCAGAGTTTGATATACGCTACAAATTGAAAGAACTAGCCGCTTATCT
CAAAATTGATCCCATCCTACTCATTAAGATGATTCAAATTTTTGAAGAGTTAGGCTTTGTGACGATTCAAGATGGAGTTA
TGCAGGTAAATAAAAACGCAGAAAAAAAAGCTATTGAAAGTAGCCATATTTATCAGGAGCTTAAAATAACTGTCAAGGAG
CAGGAACTTATGGCTCTAGGAACGGTACAGGAAATTTATGATTATCTGATAGAAAAAGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

74.865

99.462

0.745
  recJ Bacillus subtilis subsp. subtilis str. 168

38.491

100

0.405

Multiple sequence alignment