Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCSC_RS03210 Genome accession   NZ_AP014647
Coordinates   651006..652775 (+) Length   589 a.a.
NCBI ID   WP_006269913.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 646006..657775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS03185 - 646481..646711 (+) 231 WP_080572555.1 DUF1146 family protein -
  SCSC_RS03190 (SCSC_0661) murA 646749..648029 (+) 1281 WP_006269932.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SCSC_RS03195 (SCSC_0662) - 648022..648198 (+) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SCSC_RS03200 (SCSC_0663) endA 648261..649106 (+) 846 WP_003072166.1 DNA/RNA non-specific endonuclease Machinery gene
  SCSC_RS03205 (SCSC_0664) - 649260..650996 (+) 1737 WP_006269922.1 ABC transporter ATP-binding protein -
  SCSC_RS03210 (SCSC_0665) rcrQ 651006..652775 (+) 1770 WP_006269913.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS03215 (SCSC_0666) - 653148..654149 (-) 1002 WP_006269915.1 YdcF family protein -
  SCSC_RS03230 (SCSC_0669) - 654876..655256 (+) 381 WP_003069732.1 CidA/LrgA family protein -
  SCSC_RS03235 (SCSC_0670) - 655249..655944 (+) 696 WP_003040138.1 LrgB family protein -
  SCSC_RS03240 (SCSC_0671) - 656005..656937 (-) 933 WP_006270177.1 IS30 family transposase -
  SCSC_RS03245 (SCSC_0672) - 657129..657641 (+) 513 WP_006267445.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66014.10 Da        Isoelectric Point: 5.3529

>NTDB_id=55952 SCSC_RS03210 WP_006269913.1 651006..652775(+) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFGVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIHDFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIVDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=55952 SCSC_RS03210 WP_006269913.1 651006..652775(+) (rcrQ) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTGGAACCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTCTTTGGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGTGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTGCTAGGACGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACTTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCATATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCAGTTGTTGGTGGTTTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTATGGCAAGTAAACCAACCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTTGAAAGCAAACCGCTCATTCACGACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTCATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGTAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTAAAGGATAACTTGCGTTTTGGAAATCTGAGTGCAACAGATGAGGAAA
TTGTGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTTCCGGGTGGCTATAATATGGAAATGAATCAA
GAGTCTAGCAATATCTCACTGGGGCAAAAACAATTATTGACCATTGCGCGCGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCGGTTGATACGCGCCTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACGAGCCAATTTGCTAAGAA
AGAAGCTTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.444

100

0.448

Multiple sequence alignment