Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KD735_RS15115 Genome accession   NZ_CP073624
Coordinates   3061302..3061931 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AW1.7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056302..3066931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD735_RS15100 (KD735_14975) helD 3056544..3058598 (-) 2055 WP_000420536.1 DNA helicase IV -
  KD735_RS15105 (KD735_14980) yccF 3058721..3059167 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KD735_RS15110 (KD735_14985) yccS 3059177..3061339 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KD735_RS15115 (KD735_14990) sxy/tfoX 3061302..3061931 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KD735_RS15120 (KD735_14995) sulA 3062150..3062659 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KD735_RS15125 (KD735_15000) ompA 3063016..3064068 (+) 1053 WP_001307702.1 porin OmpA -
  KD735_RS15130 (KD735_15005) matP 3064143..3064595 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KD735_RS15135 (KD735_15010) ycbZ 3064781..3066541 (+) 1761 WP_000156516.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=559427 KD735_RS15115 WP_000839153.1 3061302..3061931(-) (sxy/tfoX) [Escherichia coli strain AW1.7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=559427 KD735_RS15115 WP_000839153.1 3061302..3061931(-) (sxy/tfoX) [Escherichia coli strain AW1.7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1