Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SCSC_RS02325 Genome accession   NZ_AP014647
Coordinates   459594..460304 (-) Length   236 a.a.
NCBI ID   WP_115342909.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 454594..465304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS02310 (SCSC_0474) - 455809..457149 (+) 1341 WP_006269852.1 hemolysin family protein -
  SCSC_RS02315 (SCSC_0475) - 457149..457928 (+) 780 WP_006269875.1 sulfite exporter TauE/SafE family protein -
  SCSC_RS02320 - 458140..459406 (-) 1267 Protein_432 ISL3 family transposase -
  SCSC_RS02325 (SCSC_0479) treR 459594..460304 (-) 711 WP_115342909.1 trehalose operon repressor Regulator
  SCSC_RS02330 (SCSC_0480) treP 460479..462491 (+) 2013 WP_037565804.1 PTS system trehalose-specific EIIBC component -
  SCSC_RS02335 (SCSC_0481) treC 462672..464303 (+) 1632 WP_006269850.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27597.67 Da        Isoelectric Point: 9.2438

>NTDB_id=55938 SCSC_RS02325 WP_115342909.1 459594..460304(-) (treR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKKYEQIFKLIEQDILNEKYQVNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKLKGQGSKVTKQEQIDFPVSNLT
SYQELVQQHGINSKTNVIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVVSVLDIDYLDKSLVPSMTREIAEQSIY
AYLEGKLGLHIAYAQKEITIDPATNRDKILMDIENDQHVVSVKSKVYLTDGQQFQFTDSRHKLEKFRFIDFAKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=55938 SCSC_RS02325 WP_115342909.1 459594..460304(-) (treR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAGAAATATGAACAAATTTTTAAACTCATAGAACAAGATATTCTAAATGAAAAATATCAAGTTAATGATTATCTCCC
TAGCGAGCATGAACTCGTCCAAACCTACAAAGTCAGCCGTGATACCATTCGCAAGTCACTTGATTTACTTCAAAAAGCTG
GTCTTATCCAAAAACTGAAAGGGCAGGGCTCTAAAGTTACTAAACAAGAACAGATTGACTTTCCTGTCTCCAATCTGACT
AGTTACCAAGAACTCGTGCAACAGCATGGGATAAATTCTAAAACAAATGTCATTCAGTTAGAAAAAATCACGGTTGATAA
AAAGTTATCCAATCTCACAGGCTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAGAGAGTTGTAGATGACGTCG
TTTCCGTCTTAGATATTGATTACCTTGATAAGAGCCTTGTCCCTTCCATGACTCGAGAAATAGCAGAACAATCGATTTAT
GCTTATCTAGAAGGAAAACTAGGGCTGCACATTGCTTATGCCCAAAAAGAAATCACAATTGATCCAGCTACAAACCGCGA
TAAAATTTTGATGGACATTGAAAATGATCAACATGTCGTTTCTGTTAAGTCCAAAGTCTATCTTACAGATGGACAGCAAT
TTCAATTCACAGATAGTCGCCATAAACTGGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.831

100

0.648

Multiple sequence alignment