Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KD154_RS00530 Genome accession   NZ_CP073589
Coordinates   127659..128288 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MFDS1006657     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 122659..133288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD154_RS00510 ycbZ 123049..124809 (-) 1761 WP_053265092.1 Lon protease family protein -
  KD154_RS00515 matP 124995..125447 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KD154_RS00520 ompA 125522..126574 (-) 1053 WP_001361736.1 porin OmpA -
  KD154_RS00525 sulA 126931..127440 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KD154_RS00530 sxy/tfoX 127659..128288 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KD154_RS00535 yccS 128251..130413 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KD154_RS00540 yccF 130423..130869 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KD154_RS00545 helD 130992..133046 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=559371 KD154_RS00530 WP_000839153.1 127659..128288(+) (sxy/tfoX) [Escherichia coli strain MFDS1006657]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=559371 KD154_RS00530 WP_000839153.1 127659..128288(+) (sxy/tfoX) [Escherichia coli strain MFDS1006657]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1