Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KDN43_RS06175 Genome accession   NZ_CP073586
Coordinates   1545945..1547312 (+) Length   455 a.a.
NCBI ID   WP_238868820.1    Uniprot ID   -
Organism   Proteiniphilum propionicum strain JNU-WLY501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540945..1552312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN43_RS06160 (KDN43_06155) - 1541613..1542893 (+) 1281 WP_238868816.1 metallophosphoesterase -
  KDN43_RS06165 (KDN43_06160) - 1542913..1543527 (+) 615 WP_238868817.1 ribonuclease HII -
  KDN43_RS06170 (KDN43_06165) - 1543588..1545714 (-) 2127 WP_238868819.1 Tex family protein -
  KDN43_RS06175 (KDN43_06170) radA 1545945..1547312 (+) 1368 WP_238868820.1 DNA repair protein RadA Machinery gene
  KDN43_RS06185 (KDN43_06180) - 1547810..1548967 (+) 1158 WP_238868824.1 site-specific integrase -
  KDN43_RS06190 (KDN43_06185) - 1549014..1549811 (+) 798 WP_238868825.1 hypothetical protein -
  KDN43_RS06195 (KDN43_06190) - 1549817..1551883 (-) 2067 WP_238868827.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49962.52 Da        Isoelectric Point: 6.6020

>NTDB_id=559342 KDN43_RS06175 WP_238868820.1 1545945..1547312(+) (radA) [Proteiniphilum propionicum strain JNU-WLY501]
MAKLKSVYFCTNCGYDSPKWMGKCPSCGEWSTFQEELVRKDAAHKHEDARSFEGVKSDPLPLSKIKADEEPRIDMCDTEL
NRVLGGGLVPASLVLIGGEPGIGKSTLVLQTILKLSNVRSLYVSGEESARQLKLRAARIGIENDDCLILCETNLDEIFRH
VKRTSPQLLIIDSIQTVYSEALESSPGSISQVRECAASFLKFAKQSGTPVLLVGHITKDGSIAGPKILEHIVDTVLQFEG
DQHYMYRILRGIKNRFGSTAELGIYEMNQTGLREVDNPSELLLSQNHDGLSGVAIAAAIEGIRPFLIETQSLVSTAAYGT
PQRSATGFDIRRMNMLLAVLEKRAGFKLAQKDVFLNIAGGLRVNDPGMDLAIISAVLSSSLDMTVDRDTCLCGEVGLSGE
IRPVNRIEQRIQEAEKLGFSRILVPSNNLKGFDKKVSIEIMQVKRVSDAFRLLFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=559342 KDN43_RS06175 WP_238868820.1 1545945..1547312(+) (radA) [Proteiniphilum propionicum strain JNU-WLY501]
ATGGCTAAACTGAAATCAGTATATTTTTGTACTAATTGCGGGTATGATTCACCTAAATGGATGGGTAAATGCCCGTCATG
CGGAGAGTGGTCCACATTCCAGGAAGAACTGGTACGCAAAGATGCTGCGCACAAACATGAAGATGCCCGCTCGTTTGAAG
GAGTTAAAAGCGATCCGTTGCCGTTGAGTAAAATAAAGGCTGACGAGGAACCACGCATTGATATGTGTGACACGGAGTTA
AATCGTGTACTTGGAGGAGGGCTTGTTCCGGCATCACTGGTGCTTATTGGCGGCGAACCTGGAATTGGAAAATCTACTCT
GGTACTGCAAACCATTCTGAAACTATCAAATGTTCGCTCTCTATACGTATCGGGAGAGGAGAGCGCTCGGCAGTTGAAAC
TTCGTGCTGCACGCATCGGAATTGAAAATGATGATTGCCTGATATTGTGTGAAACCAACCTCGATGAGATATTCAGGCAT
GTGAAGAGAACATCACCGCAACTGCTTATTATCGATTCCATCCAGACTGTTTACAGCGAAGCTCTGGAGTCTTCACCGGG
AAGCATCTCACAGGTAAGGGAGTGTGCTGCTTCTTTCTTGAAGTTTGCAAAGCAATCTGGCACTCCGGTATTGCTTGTCG
GGCATATTACCAAGGATGGAAGCATTGCAGGACCAAAGATACTTGAGCATATTGTTGATACTGTGTTGCAGTTTGAGGGC
GACCAGCACTATATGTATCGTATTCTGCGAGGGATTAAGAACCGGTTCGGCAGTACTGCCGAGTTGGGTATTTATGAGAT
GAATCAGACTGGACTGAGGGAGGTAGACAACCCCTCGGAACTATTACTTTCACAAAACCATGACGGGTTGAGTGGTGTTG
CTATTGCTGCCGCTATTGAAGGTATCCGCCCTTTCCTAATCGAAACGCAATCACTTGTGAGTACAGCTGCATACGGCACG
CCTCAACGTTCTGCTACCGGCTTCGATATCAGGAGGATGAATATGTTGCTTGCAGTTTTGGAAAAACGTGCAGGTTTCAA
ACTCGCACAAAAAGATGTTTTCCTTAATATTGCAGGAGGCCTGAGAGTGAACGATCCTGGTATGGACCTTGCGATAATTA
GTGCCGTTCTGTCATCGAGTCTCGACATGACGGTCGATCGCGACACATGTCTCTGTGGTGAAGTGGGGCTATCGGGAGAA
ATACGCCCTGTGAACCGTATCGAGCAACGTATTCAGGAAGCAGAAAAGCTGGGTTTTTCGCGCATACTTGTTCCTTCTAA
CAACCTGAAAGGATTTGATAAGAAGGTGTCCATAGAGATAATGCAAGTGAAGAGAGTAAGCGATGCTTTCAGGTTACTAT
TCTCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.881

99.78

0.508
  radA Streptococcus mitis SK321

47.484

100

0.477
  radA Streptococcus mitis NCTC 12261

47.484

100

0.477
  radA Streptococcus pneumoniae Rx1

47.484

100

0.477
  radA Streptococcus pneumoniae D39

47.484

100

0.477
  radA Streptococcus pneumoniae R6

47.484

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.484

100

0.477