Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KDD30_RS13980 Genome accession   NZ_CP073578
Coordinates   3025886..3026425 (-) Length   179 a.a.
NCBI ID   WP_211646387.1    Uniprot ID   -
Organism   Photobacterium sp. GJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3020886..3031425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDD30_RS13970 (KDD30_13970) - 3021801..3024779 (-) 2979 WP_211646385.1 hypothetical protein -
  KDD30_RS13975 (KDD30_13975) - 3025135..3025614 (-) 480 WP_211646386.1 GNAT family N-acetyltransferase -
  KDD30_RS13980 (KDD30_13980) ssb 3025886..3026425 (-) 540 WP_211646387.1 single-stranded DNA-binding protein Machinery gene
  KDD30_RS13985 (KDD30_13985) uvrA 3026677..3029526 (+) 2850 WP_211646388.1 excinuclease ABC subunit UvrA -
  KDD30_RS13990 (KDD30_13990) - 3029597..3031375 (+) 1779 WP_211646389.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19860.93 Da        Isoelectric Point: 5.2257

>NTDB_id=559326 KDD30_RS13980 WP_211646387.1 3025886..3026425(-) (ssb) [Photobacterium sp. GJ3]
MASRGVNKVILVGNLGQDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRFTTEVVVQGFNGVMQMLGGRQGGGQGAPMGGQQQQGGWGQPQQPQQQPKQQQNYAPQQQSAPQ
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=559326 KDD30_RS13980 WP_211646387.1 3025886..3026425(-) (ssb) [Photobacterium sp. GJ3]
ATGGCCAGTCGTGGCGTAAATAAAGTGATCCTGGTGGGTAACTTAGGACAAGATCCTGAAATCCGTTATATGCCGAACGG
CGGTGCAGTCGCAAATATCACCATCGCGACTTCTGACAGCTGGCGTGATAAAGCCACCGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTGGCGCTGTTCGGCAAGCTGGCTGAAGTGGCTGGTGAGTATCTGCGTAAAGGGTCTCAGGTTTACATT
GAAGGTCAGCTGCAAACCCGTAAGTGGCAGGATCAAAACGGTCAGGATCGCTTCACGACCGAAGTGGTTGTTCAGGGCTT
CAACGGTGTGATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGTCAGGGCGCGCCAATGGGTGGTCAGCAGCAGCAGGGTG
GCTGGGGACAACCACAGCAACCACAACAGCAACCGAAGCAACAGCAAAACTACGCGCCTCAGCAGCAGTCTGCACCTCAG
CAGTCTCAGCCGCAGTACAATGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.891

100

0.821
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.581
  ssb Neisseria meningitidis MC58

45.763

98.883

0.453
  ssb Neisseria gonorrhoeae MS11

45.763

98.883

0.453