Detailed information NTG0559306

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: KDD30_RS01880
• Genome accession: NZ_CP073578
• Coordinates: 395714..399148 (-)
• Length: 1144 a.a.
• NCBI ID: WP_211647134.1
• Uniprot ID: -
• Organism: Photobacterium sp. GJ3
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 390714..404148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KDD30_RS01860 (KDD30_01860)	-	391128..392159 (-)	1032	WP_211647130.1	ABC transporter permease	-
KDD30_RS01865 (KDD30_01865)	-	392162..393151 (-)	990	WP_211647131.1	ABC transporter permease	-
KDD30_RS01870 (KDD30_01870)	-	393292..394965 (-)	1674	WP_211647132.1	ABC transporter substrate-binding protein	-
KDD30_RS01875 (KDD30_01875)	-	395291..395623 (+)	333	WP_211647133.1	hypothetical protein	-
KDD30_RS01880 (KDD30_01880)	chiS	395714..399148 (-)	3435	WP_211647134.1	response regulator	Regulator
KDD30_RS01885 (KDD30_01885)	rsmC	399418..400458 (-)	1041	WP_211647135.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
KDD30_RS01890 (KDD30_01890)	-	400533..401578 (-)	1046	Protein_346	AI-2E family transporter	-
KDD30_RS01895 (KDD30_01895)	-	401869..402402 (+)	534	WP_211647136.1	cytochrome P460 family protein	-
KDD30_RS01900 (KDD30_01900)	hemL	402473..403767 (-)	1295	Protein_348	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1144 a.a.
• Molecular weight: 128571.77 Da
• Isoelectric Point: 5.5271

>NTDB_id=559306 KDD30_RS01880 WP_211647134.1 395714..399148(-) (chiS) [Photobacterium sp. GJ3]
MQKTTRFKRLQHTLMLAFLMLSLIPLTLSSLFFLHSHTRDLAEQSTNHLASLRDNKSQQLSAFFASKESEIQSFVSSELA
NASGGRFYGLVGAFRQLGDINRLSKGASRGDYYSQMLTTKPLTNTVDNTSSDYIVQERYRLIYKRYHWAYEEYLKRSDFL
DILLVDLDGNVVYTSQNQDLFAANLSQATAQFPALNETFLSIQSLTNQYRVRQSQHARQQTGERESEPLPVAFTDFTAEH
ADGSATAWFAAPIIQHGYLHSYAFFQLNNQALASVMINSREGSQSVQTLLVGPDHSLRLPKENDLPQQLSSKSIDAALAG
QAGVGSLHNYQNIPVLSAYAPIDVLGHQWALAVELPEQEAFSRIHKLEEFFLLAILAAVIGVTLTAHWLSNYITAPLLRL
TWAAEQVSAGDLDQKITSTDRRDEIGRLAISFARMQRSIREKITLIREQNKELEQNLAVIQQQNDELQTADKLKDEFLAT
TSHELRTPLHGMVGIAEALMAGANGPVQSGQARQLEMMISSGQRLTRLVDDLLDYHKMRYGDLDIQPHAVDLAAANRLVL
ELSSHLLDNKPVRIINQIQPDLPLVLADEQRLEQILYNLVGNAIKYTTEGKIILSATILENQVRIQVVDTGQGIPSEQLE
HIFEPLVQANIGAPNYRQGAGLGLSITRQLIELMGGSLYVSSQPMIGTTFSFTLPLATADEIARSKQCRVQTHFQAPRQE
PHVIESGDLPEQADGELLLVVDDEPVNLQVVTSFLRMSGFRVITAENGPQALQLLDTHQPDLILLDVMMPGMSGYEVCQQ
LRTRFSLIELPVIMLSALGQVQDRVKGFEYGANDYLSKPFHKDELTARIRAHLQAAQAERQRQENVTLQQEIQHREAVQA
ALLDTQTRLLGLLETTSEAILCVRNDGRIRYANHAAGQLFLRSPEQLERLSIQDILLTQLPDHIEQNRHYSGELTYRIQD
ENLTLATDLIQLPEASGLSQMFLFDSQGPSSEERIALLENAVDVLSGFAADGDKHSLQQLRALGDEFSQLADRLDHGQPD
KADQLRELLVEVMKASLHVWESQTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETLPKTPRWRTVISTLDFVLAR
CPKASPEREQMTEMRNRIQRMVQG

Nucleotide

• Length: 3435 bp

>NTDB_id=559306 KDD30_RS01880 WP_211647134.1 395714..399148(-) (chiS) [Photobacterium sp. GJ3]
ATGCAGAAAACCACACGGTTTAAACGTCTTCAGCATACCCTTATGCTGGCTTTTCTCATGCTCAGCCTGATCCCTCTGAC
GTTATCATCCCTGTTTTTCCTCCACTCCCACACCCGGGATCTTGCAGAACAAAGTACCAACCATCTGGCTTCGCTTCGGG
ATAACAAAAGTCAGCAACTCAGCGCGTTTTTTGCCTCAAAAGAATCTGAAATACAAAGCTTTGTCAGTTCTGAACTGGCC
AATGCCAGTGGCGGGCGCTTCTACGGACTGGTCGGCGCCTTCCGCCAGCTAGGGGACATTAACCGACTCAGTAAAGGAGC
GAGCCGGGGCGATTATTACAGCCAGATGCTGACGACCAAACCCTTGACAAATACCGTTGACAATACCTCGTCAGACTATA
TCGTTCAGGAACGCTACCGGCTGATCTACAAGCGCTATCACTGGGCCTATGAAGAGTATCTGAAACGTTCCGATTTTCTG
GATATCTTGCTGGTCGATCTGGATGGGAATGTCGTTTATACCTCGCAGAATCAAGATTTGTTTGCGGCCAATCTGTCTCA
GGCGACTGCACAGTTTCCGGCGCTGAACGAGACCTTCCTCAGCATCCAGAGCCTGACGAATCAATATCGGGTCCGGCAAT
CCCAACATGCGCGCCAGCAAACCGGTGAACGTGAATCCGAGCCGTTACCCGTCGCCTTTACCGACTTCACTGCAGAGCAT
GCTGACGGTAGCGCAACGGCCTGGTTTGCTGCGCCCATCATCCAGCACGGTTACCTGCACAGTTATGCTTTTTTCCAGCT
GAACAACCAAGCCCTTGCCTCGGTGATGATCAACAGCCGGGAAGGCAGCCAGTCCGTCCAGACATTGCTAGTTGGTCCGG
ATCACAGCCTGCGCTTACCAAAAGAAAATGACCTCCCTCAGCAACTGTCCAGCAAAAGCATTGATGCGGCACTGGCCGGA
CAGGCGGGTGTGGGCAGCCTGCACAATTACCAGAACATTCCGGTACTCAGTGCTTATGCTCCCATTGATGTCCTTGGCCA
TCAATGGGCACTGGCCGTCGAGTTACCAGAGCAGGAAGCGTTCTCCAGAATTCATAAGCTGGAGGAATTTTTTCTCCTCG
CCATTCTGGCTGCCGTCATCGGCGTGACCCTGACAGCCCACTGGCTGTCGAACTATATTACTGCGCCGCTGCTGCGGCTG
ACCTGGGCTGCGGAGCAGGTTTCAGCAGGTGATCTGGATCAGAAAATCACCTCGACCGATCGCCGGGATGAAATTGGCCG
TCTGGCGATCAGCTTTGCCCGGATGCAGCGTTCGATCCGGGAAAAAATCACCCTGATCCGTGAACAGAATAAAGAGTTGG
AGCAAAATCTGGCGGTGATTCAGCAGCAGAATGACGAACTGCAAACCGCTGATAAGCTCAAAGATGAATTTCTGGCGACC
ACCTCCCATGAGTTGCGGACGCCGCTGCATGGCATGGTGGGCATTGCTGAAGCACTGATGGCGGGGGCCAATGGTCCAGT
CCAGTCCGGACAAGCCCGTCAGTTGGAGATGATGATCAGCAGCGGCCAGCGCCTGACCCGGCTGGTCGATGACCTGCTCG
ATTACCATAAAATGCGTTACGGCGATCTGGATATTCAGCCCCATGCTGTCGATCTGGCGGCTGCCAACCGCCTCGTTCTG
GAGCTGTCTTCCCATTTACTGGATAACAAGCCGGTCCGGATCATCAACCAGATTCAGCCGGATCTGCCGTTGGTTCTGGC
GGATGAACAGCGGCTGGAACAAATTCTCTATAATCTGGTTGGCAATGCCATCAAGTACACCACAGAAGGCAAAATCATCC
TGTCTGCCACCATTCTGGAAAATCAGGTCCGGATTCAAGTCGTGGATACCGGACAAGGCATTCCGTCAGAGCAGCTTGAG
CATATTTTTGAACCGCTGGTGCAGGCCAACATCGGAGCGCCGAACTACCGCCAGGGTGCGGGGCTGGGACTGTCGATCAC
ACGCCAGCTGATTGAGCTGATGGGCGGCAGTTTGTATGTCAGCAGCCAGCCGATGATCGGCACCACCTTCAGCTTTACGT
TACCTCTGGCCACAGCAGACGAAATTGCCCGCAGCAAACAATGCAGGGTTCAAACCCATTTTCAGGCGCCGCGCCAGGAA
CCCCATGTCATTGAATCCGGAGATTTACCTGAACAGGCCGATGGTGAACTGCTGCTGGTGGTCGATGATGAGCCGGTCAA
TCTTCAGGTGGTGACCAGCTTCCTGCGGATGTCCGGATTCAGGGTGATCACTGCAGAAAACGGCCCTCAGGCCCTGCAAC
TTCTGGACACCCATCAGCCGGATCTGATCCTGCTGGATGTCATGATGCCCGGCATGAGTGGCTATGAAGTCTGTCAGCAG
CTGCGCACCCGTTTTTCTCTGATTGAACTGCCGGTCATCATGCTGTCGGCACTGGGTCAGGTGCAGGACCGGGTGAAAGG
CTTTGAGTATGGTGCCAACGACTATCTGAGCAAGCCGTTCCACAAAGATGAACTGACCGCCCGGATCCGGGCACATTTAC
AGGCCGCTCAGGCGGAACGACAACGGCAGGAAAATGTCACACTGCAACAGGAAATTCAGCACCGGGAAGCCGTACAGGCC
GCTTTACTCGACACGCAAACCCGCCTGCTGGGCCTGCTTGAAACCACCAGCGAAGCCATTTTGTGCGTCCGCAATGACGG
ACGGATCCGCTACGCCAACCATGCTGCCGGACAGCTGTTTCTGCGTTCCCCGGAACAACTGGAGCGCTTGTCGATTCAGG
ACATCCTGTTGACTCAGCTCCCCGATCATATTGAGCAGAACCGGCATTACAGTGGCGAGCTAACCTACCGAATCCAGGAT
GAGAATCTGACACTGGCGACGGATCTGATTCAGTTACCGGAGGCTTCCGGACTCAGCCAGATGTTCCTCTTTGACAGTCA
GGGACCGAGCTCCGAAGAGCGCATCGCGCTGCTGGAAAATGCCGTGGATGTCTTGTCCGGTTTTGCGGCAGATGGTGACA
AGCACAGCCTGCAACAACTGCGGGCACTGGGGGATGAATTCAGTCAACTGGCCGATCGGCTGGACCACGGCCAGCCGGAT
AAAGCCGATCAGCTCCGTGAGCTGCTGGTCGAGGTGATGAAAGCCAGCCTGCATGTCTGGGAATCGCAAACCGGGAAAAC
CAAGTTTGATCTGGCCGAAGAGAGCGGTTTATGGCGTGTTTATCTGGACCGCAGTACGCTGCAAACCCGAACGCTGGACA
AATACCTGCATGTCGAGACGTTGCCGAAAACGCCCCGCTGGCGCACAGTGATCAGTACACTGGATTTTGTGCTGGCCCGT
TGTCCGAAAGCCAGCCCTGAGCGCGAGCAAATGACTGAGATGCGAAACCGGATTCAACGGATGGTTCAAGGCTGA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (588-697)

• Response regulator receiver domain (Response_reg) (739-850)

• HAMP domain (HAMP) (388-441)

• His Kinase A (phospho-acceptor) domain (HisKA) (474-539)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	55.546	100	0.556