Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KDN44_RS14265 Genome accession   NZ_CP073360
Coordinates   2964970..2965599 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2959970..2970599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN44_RS14250 helD 2960212..2962266 (-) 2055 WP_000420533.1 DNA helicase IV -
  KDN44_RS14255 yccF 2962389..2962835 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KDN44_RS14260 yccS 2962845..2965007 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KDN44_RS14265 sxy/tfoX 2964970..2965599 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KDN44_RS14270 sulA 2965818..2966327 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KDN44_RS14275 ompA 2966684..2967736 (+) 1053 WP_000750419.1 porin OmpA -
  KDN44_RS14280 matP 2967811..2968263 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KDN44_RS14285 ycbZ 2968449..2970209 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=559216 KDN44_RS14265 WP_000839153.1 2964970..2965599(-) (sxy/tfoX) [Escherichia coli strain EC11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=559216 KDN44_RS14265 WP_000839153.1 2964970..2965599(-) (sxy/tfoX) [Escherichia coli strain EC11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1