Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SCSC_RS00215 Genome accession   NZ_AP014647
Coordinates   28663..29436 (+) Length   257 a.a.
NCBI ID   WP_006270086.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23663..34436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS00195 (SCSC_0041) mreD 24340..24840 (+) 501 WP_006270094.1 rod shape-determining protein MreD -
  SCSC_RS00200 (SCSC_0042) - 24950..26161 (+) 1212 WP_006270099.1 CHAP domain-containing protein -
  SCSC_RS00205 (SCSC_0043) - 26302..27273 (+) 972 WP_020997513.1 ribose-phosphate diphosphokinase -
  SCSC_RS00210 (SCSC_0044) - 27498..28685 (+) 1188 WP_006270089.1 pyridoxal phosphate-dependent aminotransferase -
  SCSC_RS00215 (SCSC_0045) recO 28663..29436 (+) 774 WP_006270086.1 DNA repair protein RecO Machinery gene
  SCSC_RS00220 (SCSC_0046) plsX 29433..30431 (+) 999 WP_006270084.1 phosphate acyltransferase PlsX -
  SCSC_RS00225 (SCSC_0047) - 30428..30673 (+) 246 WP_006270090.1 acyl carrier protein -
  SCSC_RS00230 (SCSC_0048) purC 30832..31539 (+) 708 WP_006270101.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30031.47 Da        Isoelectric Point: 5.8604

>NTDB_id=55912 SCSC_RS00215 WP_006270086.1 28663..29436(+) (recO) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEIRTFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFVFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRVG
LPFDFSFTYSGVLCPEHYDKDERRSHLEPNIPYLLDQFQAVQFSELETISLKSELKKQLRKVIDQIYEEYVGIHLKSKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=55912 SCSC_RS00215 WP_006270086.1 28663..29436(+) (recO) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGCTGAAATCTATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAGTTGGTCAAAATTTT
CACAGAGCAAGCGGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTATCCAACCACTAG
TAGTGGCAGATTTTTTGATGAAAATAAATGATGACGGTTTAAGTTATATTGATGATTATCAAGAAATTAGAACTTTTCAG
CATATCAATCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTGGCGGATGCCAGTATTCAGGATAATGA
AATAGATTCTGCTCTCTTTGTTTTTTTGCAAAAAACATTAGAATTGATGGAGCAAGGTTTAGACTATGAAGTCTTGACAA
ATATTTTTGAAATTCAAATTTTATCGCGTTTTGGTGTTTCTTTGAATTTTCATGAGTGTTGCTTTTGCCATCGAGTAGGA
CTGCCGTTTGATTTTTCTTTTACTTATAGTGGCGTTTTATGTCCGGAGCATTACGACAAGGACGAGCGACGGAGTCATTT
GGAGCCCAATATTCCTTACTTATTAGACCAATTTCAGGCTGTTCAATTTAGTGAACTGGAGACAATTTCTTTGAAATCTG
AATTGAAAAAACAATTGCGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGTCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATCTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-78)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747

Multiple sequence alignment