Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KD050_RS10075 Genome accession   NZ_CP073315
Coordinates   1980230..1981600 (-) Length   456 a.a.
NCBI ID   WP_211895997.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1975230..1986600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS10055 (KD050_10055) gltX 1976173..1977636 (-) 1464 WP_211895993.1 glutamate--tRNA ligase -
  KD050_RS10060 (KD050_10060) ispF 1977707..1978186 (-) 480 WP_211895994.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KD050_RS10065 (KD050_10065) ispD 1978188..1978874 (-) 687 WP_211895995.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KD050_RS10070 (KD050_10070) - 1978942..1980030 (-) 1089 WP_211895996.1 PIN/TRAM domain-containing protein -
  KD050_RS10075 (KD050_10075) radA 1980230..1981600 (-) 1371 WP_211895997.1 DNA repair protein RadA Machinery gene
  KD050_RS10080 (KD050_10080) - 1981660..1984107 (-) 2448 WP_211895998.1 ATP-dependent Clp protease ATP-binding subunit -
  KD050_RS10085 (KD050_10085) - 1984104..1985198 (-) 1095 WP_211895999.1 protein arginine kinase -
  KD050_RS10090 (KD050_10090) - 1985188..1985733 (-) 546 WP_211896000.1 UvrB/UvrC motif-containing protein -
  KD050_RS10095 (KD050_10095) - 1985751..1986224 (-) 474 WP_090567701.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49849.42 Da        Isoelectric Point: 6.8997

>NTDB_id=559002 KD050_RS10075 WP_211895997.1 1980230..1981600(-) (radA) [Psychrobacillus sp. INOP01]
MAKKKTKFMCNSCGYESAKWMGRCPGCGEWNTMVEETEIVSKGPKRSFQHSDGVAQKATPIISVVTAEEPRVTTDFAELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSAELYIYSETNLELINE
TIESVEPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNVAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMIQSGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRVSLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGVTPTDCFIGEIGLTG
EVRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPKGIQIIGIETVNEAMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=559002 KD050_RS10075 WP_211895997.1 1980230..1981600(-) (radA) [Psychrobacillus sp. INOP01]
ATGGCTAAAAAGAAAACGAAATTTATGTGTAACTCATGTGGTTATGAATCTGCAAAATGGATGGGAAGATGTCCTGGATG
TGGAGAATGGAACACTATGGTAGAAGAAACTGAAATAGTATCCAAAGGTCCAAAACGCTCCTTTCAGCATTCGGACGGGG
TAGCGCAGAAGGCTACCCCGATTATTTCAGTAGTAACAGCCGAAGAACCCCGGGTGACAACCGATTTTGCTGAATTGAAT
CGTGTTCTTGGTGGGGGTATTGTACCAGGATCGCTAGTGTTAATAGGGGGAGACCCGGGTATAGGAAAGTCTACTCTTCT
TTTACAGGTTTCAGCTTTACTTGCCAATAAGGGAGAGCGAGTGCTATATATTTCGGGCGAGGAATCTATCCGTCAGACCA
AGCTTCGTGCAGAACGTTTAGGGGTGACCTCAGCTGAGCTTTATATCTACTCAGAAACCAATTTAGAACTAATCAATGAA
ACTATTGAAAGTGTAGAGCCCAAATTTGTCATAGTGGACTCTATTCAAACTGTTCATCATCCAGAAGTGACTAGTGCACC
AGGGAGTGTATCGCAAGTTAGAGAATGTACAGCAGAGCTTATGCGAATAGCCAAAACGAAAAATGTAGCAATCTTTTTAG
TGGGACACGTAACGAAAGAAGGGCAAATTGCAGGCCCACGTATCTTGGAACATATGGTAGACACCGTATTGTATTTTGAA
GGAGAACGTCACCATACGTATCGTATTTTAAGATCTCAGAAGAACCGTTTTGGCTCTACGAATGAAATTGCCATTTTTGA
AATGATTCAATCTGGATTAAAAGAAGTGCTTAATCCGTCTGAATTATTTTTGCAGGAACGATCTCACGGAGCAGCGGGGT
CCGCAATTGTTGCCTCTATGGAAGGTACCAGACCTATTTTAGTAGAGATTCAAGCGCTAGTGACTCAATCTAGCTTTAAT
TACCCGAAACGTATGGCTACTGGTATTGATCAAAACCGTGTTTCATTACTAATGGCGGTACTGGAAAAGAGAATGGGATT
GCTGCTTCAAACGCAAGATGCTTATATAAAAGTTGCAGGTGGAGTAAAATTAGATGAACCTGCGATCGATTTAGCCGTCC
TAGTAAGTATCGTCTCTAGTTTCCGGGATACAGGGGTTACACCAACAGACTGTTTTATCGGAGAAATCGGTTTAACTGGA
GAAGTGAGAAGGGTGTCTAGGATTGAGCAGCGGGTGCAAGAGGCAGCGAAGCTTGGTTTTAAAAGAGCGATTGTTCCTGC
ATCTAATTTAGGTGGTTGGGATTATCCAAAAGGCATCCAAATTATAGGGATTGAAACAGTTAACGAAGCGATGAAAGAGG
CATTTTCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.179

100

0.715
  radA Streptococcus pneumoniae Rx1

62.061

100

0.621
  radA Streptococcus pneumoniae D39

62.061

100

0.621
  radA Streptococcus pneumoniae R6

62.061

100

0.621
  radA Streptococcus pneumoniae TIGR4

62.061

100

0.621
  radA Streptococcus mitis NCTC 12261

62.061

100

0.621
  radA Streptococcus mitis SK321

61.842

100

0.618