Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KD050_RS08600 Genome accession   NZ_CP073315
Coordinates   1710205..1711161 (-) Length   318 a.a.
NCBI ID   WP_211895756.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705205..1716161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS08575 (KD050_08575) - 1705646..1706296 (-) 651 WP_211895751.1 uracil-DNA glycosylase -
  KD050_RS08580 (KD050_08580) - 1706342..1706953 (-) 612 WP_211895752.1 phosphatase PAP2 family protein -
  KD050_RS08585 (KD050_08585) - 1707341..1708378 (-) 1038 WP_211895753.1 siderophore ABC transporter substrate-binding protein -
  KD050_RS08590 (KD050_08590) - 1708498..1709265 (-) 768 WP_211895754.1 ABC transporter ATP-binding protein -
  KD050_RS08595 (KD050_08595) - 1709262..1710218 (-) 957 WP_211895755.1 iron chelate uptake ABC transporter family permease subunit -
  KD050_RS08600 (KD050_08600) ceuB 1710205..1711161 (-) 957 WP_211895756.1 ABC transporter permease Machinery gene
  KD050_RS08605 (KD050_08605) - 1711639..1712484 (-) 846 WP_211895757.1 DUF6612 family protein -
  KD050_RS08610 (KD050_08610) - 1712618..1714105 (-) 1488 WP_211895758.1 peptide MFS transporter -
  KD050_RS08615 (KD050_08615) - 1714428..1716146 (+) 1719 WP_211895759.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34733.90 Da        Isoelectric Point: 9.7577

>NTDB_id=559000 KD050_RS08600 WP_211895756.1 1710205..1711161(-) (ceuB) [Psychrobacillus sp. INOP01]
MRLWMLIVTVIILSVISLFIGAIDIKPSDLLNWESLETQIFLISRLPRLLAIILAGAGMGIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGIIISMMFFTGMSYIGQIAFSFAFALIGTFIFMQLLERIKFKDAVFVPLIGIMYGNVIGALSTFLAYEGNML
QNVDAFFQGSFTLVVSGRYELLYVAVPAIIIAYIYANKFTVAGMGEDFAKNLGLSYRTVLNIGLIIVAVISTTVILTVGV
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFMGAAFLLFCDIISRLIVHPFEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=559000 KD050_RS08600 WP_211895756.1 1710205..1711161(-) (ceuB) [Psychrobacillus sp. INOP01]
ATGAGACTGTGGATGTTAATTGTTACAGTAATCATCCTGTCAGTTATTTCGCTATTTATTGGTGCAATTGACATAAAGCC
AAGTGATTTGCTTAATTGGGAATCATTAGAAACACAGATTTTCTTAATAAGTCGTTTACCAAGATTATTAGCAATAATTT
TAGCTGGCGCAGGGATGGGTATTGCAGGTTTGATAATGCAAAGTTTAAGTCGAAACAAATTTGTATCGCCAACAACGGCT
GGTACGTTAGATGCAGCAAAACTAGGGATTATCATATCAATGATGTTCTTTACAGGTATGTCATATATTGGGCAAATCGC
TTTTAGTTTTGCATTTGCTTTAATTGGTACATTTATTTTTATGCAGCTGCTTGAACGAATTAAGTTCAAAGATGCTGTGT
TTGTACCACTTATCGGTATTATGTACGGAAATGTTATAGGAGCACTATCTACTTTCCTAGCGTATGAAGGGAACATGCTA
CAAAATGTCGATGCATTTTTTCAGGGGAGTTTCACGCTAGTTGTTTCTGGACGCTATGAGCTTCTTTATGTAGCTGTACC
AGCAATTATTATTGCTTATATTTACGCCAATAAATTTACCGTAGCGGGTATGGGTGAGGATTTTGCTAAAAATCTCGGCT
TAAGCTATCGTACGGTATTGAATATAGGGTTAATTATTGTTGCTGTTATTTCGACGACAGTCATATTAACTGTGGGTGTT
ATCCCGTTTTTAGGATTAATAGTACCAAACCTTGTTTCCCTTTATTTAGGGGATAATTTACGTAAAACAATACCACACAC
CATTTTTATGGGTGCAGCATTTTTATTGTTCTGTGATATTATTAGCCGCTTAATCGTACATCCATTTGAAATTCCGGTAA
ATACAACTGTTGCAGTAATTGGTAGTGCGATCTTCTTAATTATGTTGTTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.371

0.531