Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KD050_RS01850 Genome accession   NZ_CP073315
Coordinates   359730..361433 (-) Length   567 a.a.
NCBI ID   WP_211894582.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 354730..366433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS01835 (KD050_01835) - 355265..356836 (-) 1572 WP_211894579.1 DUF342 domain-containing protein -
  KD050_RS01840 (KD050_01840) spo0A 357273..358064 (-) 792 WP_211894580.1 sporulation transcription factor Spo0A -
  KD050_RS01845 (KD050_01845) - 358676..359635 (-) 960 WP_211894581.1 SpoIVB peptidase S55 domain-containing protein -
  KD050_RS01850 (KD050_01850) recN 359730..361433 (-) 1704 WP_211894582.1 DNA repair protein RecN Machinery gene
  KD050_RS01855 (KD050_01855) ahrC 361450..361899 (-) 450 WP_211894583.1 transcriptional regulator AhrC/ArgR -
  KD050_RS01860 (KD050_01860) - 362002..362820 (-) 819 WP_211894584.1 TlyA family RNA methyltransferase -
  KD050_RS01865 (KD050_01865) dxs 362817..364712 (-) 1896 WP_211896171.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KD050_RS01870 (KD050_01870) - 364800..365684 (-) 885 WP_211894585.1 polyprenyl synthetase family protein -
  KD050_RS01875 (KD050_01875) xseB 365677..365898 (-) 222 WP_211894586.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64054.05 Da        Isoelectric Point: 4.8523

>NTDB_id=558987 KD050_RS01850 WP_211894582.1 359730..361433(-) (recN) [Psychrobacillus sp. INOP01]
MLKELTIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSHEFIRHEAKKAELEGLFIISNPGHGVVKK
LADVGIDIEDESIILRRDINQSGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGENLKEVK
ESYQELYKQYKKWKKELDKLSENEQQIAHKIDLYTFQVEEIADSNLVIGEEDQLQEQKKKLQNFHKVFDKMSNAYDAILT
ESKGLDYIGTAMADLQDIADVDKNMQELSENVSSAFYILQDAAYQLKNELDEMEFDNNQLQIVDERLATIQTLKRKYGSS
IEEILQYKDQIQYSLDQLVNRDEQIQKMTEKIRQIEIDLELEAIDLTDKRKNAAKLLSVAIMEQLQELYMEKATFSVMFH
ETVKPVYNENGLDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQSIAEKI
SGIASNSQVLCISHLPQVAAMADQHLMIKKEVSGNRTFTVLEEVQNDKRAEELSRMMSGAEITSTTLQHSKELLKLAENR
KKIIRNL

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=558987 KD050_RS01850 WP_211894582.1 359730..361433(-) (recN) [Psychrobacillus sp. INOP01]
TTGTTGAAGGAACTAACGATAAAAAACTTTGCCATTATTGATGAATTGACCGTCAGTTTTGAAGAAGGGCTTACTGTGCT
TACTGGAGAAACTGGAGCAGGAAAGTCTATTATTATTGATGCTGTACATTTGTTATGTGGTGGGAGAGGCTCACATGAAT
TCATTAGACATGAAGCTAAAAAAGCCGAATTAGAAGGCTTATTTATTATTTCTAATCCCGGGCATGGTGTTGTTAAAAAG
CTGGCAGACGTTGGTATTGATATTGAAGACGAATCTATTATTTTAAGAAGAGATATTAACCAGTCAGGTAAAAGTGTCTG
TAGAGTAAATGGGAAACTTGTAACAATTGGTATTTTAAGAGAAATTGGTGCTTCTTTAATAGATATTCATGGGCAGCACG
AGAGTCAAGAATTGATGGACGATAAAGCCCATATCCATTTGTTGGATCAATTTGCTGGAGAAAATCTAAAAGAAGTGAAA
GAATCCTATCAAGAACTTTATAAACAATATAAAAAGTGGAAAAAAGAACTCGATAAACTATCGGAGAACGAACAACAGAT
TGCACATAAGATTGACTTGTATACGTTCCAAGTAGAAGAAATAGCCGATTCGAATCTAGTTATAGGTGAAGAGGATCAAT
TACAGGAACAGAAAAAGAAATTACAAAATTTCCATAAGGTCTTCGACAAAATGAGTAATGCCTATGATGCTATTTTGACC
GAATCCAAAGGTCTAGATTATATAGGTACAGCAATGGCTGATCTTCAGGATATAGCAGATGTTGATAAAAATATGCAGGA
ACTTAGCGAAAACGTGTCTTCAGCTTTTTACATATTGCAAGATGCAGCATATCAGTTAAAAAATGAGTTAGATGAGATGG
AATTTGATAACAATCAACTTCAAATCGTGGACGAGCGTTTAGCAACTATCCAAACCTTAAAACGAAAATATGGTTCATCA
ATTGAAGAAATTTTACAATACAAAGATCAAATTCAATACAGCTTAGATCAGTTGGTAAATCGTGATGAGCAAATTCAAAA
AATGACAGAAAAAATACGTCAAATTGAAATTGATTTAGAATTAGAGGCTATTGATTTAACGGATAAACGTAAAAACGCTG
CAAAATTATTAAGCGTTGCCATCATGGAGCAATTACAAGAATTATATATGGAAAAGGCTACTTTTTCGGTTATGTTTCAT
GAAACAGTTAAACCAGTCTATAATGAAAATGGGTTAGACGACTTGTCTTTTTATATTTCAACGAATGTAGGCGAACCTCT
GAAGGCATTAACTAAAATTGCTTCGGGTGGAGAGTTATCACGTATGATGCTTGCACTTAAAAGTATTTTCTCTAAGCATC
AAGGCATTACATCCATTATTTTTGATGAAGTTGATACTGGAGTAAGTGGACGCGTTGCCCAATCAATAGCAGAAAAAATT
TCAGGGATTGCCTCGAACTCGCAAGTGCTTTGTATATCTCATTTACCACAAGTTGCAGCGATGGCGGATCAACATTTAAT
GATTAAAAAAGAGGTCAGTGGTAATCGAACTTTTACTGTATTAGAAGAAGTACAAAATGATAAACGAGCAGAAGAACTAA
GTCGGATGATGTCTGGTGCTGAAATTACAAGCACAACGTTACAGCATTCGAAAGAACTTTTAAAATTAGCGGAAAATCGC
AAAAAAATTATAAGAAATCTGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.962

100

0.536