Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KDU74_RS05995 Genome accession   NZ_CP073310
Coordinates   1188771..1189397 (-) Length   208 a.a.
NCBI ID   WP_178327482.1    Uniprot ID   -
Organism   Enterobacter cloacae strain CZ862     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183771..1194397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDU74_RS05980 (KDU74_05980) helD 1184009..1186063 (-) 2055 WP_211944451.1 DNA helicase IV -
  KDU74_RS05985 (KDU74_05985) - 1186186..1186632 (+) 447 WP_178327483.1 YccF domain-containing protein -
  KDU74_RS05990 (KDU74_05990) yccS 1186652..1188814 (+) 2163 WP_014831317.1 YccS family putative transporter -
  KDU74_RS05995 (KDU74_05995) sxy/tfoX 1188771..1189397 (-) 627 WP_178327482.1 TfoX/Sxy family DNA transformation protein Regulator
  KDU74_RS06000 (KDU74_06000) sulA 1189615..1190124 (+) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  KDU74_RS06005 (KDU74_06005) ompA 1190479..1191534 (+) 1056 WP_178327481.1 porin OmpA -
  KDU74_RS06010 (KDU74_06010) matP 1191598..1192050 (-) 453 WP_013097258.1 macrodomain Ter protein MatP -
  KDU74_RS06015 (KDU74_06015) - 1192237..1193997 (+) 1761 WP_178327480.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23901.44 Da        Isoelectric Point: 8.9492

>NTDB_id=558966 KDU74_RS05995 WP_178327482.1 1188771..1189397(-) (sxy/tfoX) [Enterobacter cloacae strain CZ862]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAAGKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=558966 KDU74_RS05995 WP_178327482.1 1188771..1189397(-) (sxy/tfoX) [Enterobacter cloacae strain CZ862]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGGG
TAAAGAGCGCATCCAGCGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCACTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567