Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J8N01_RS06170 Genome accession   NZ_CP073301
Coordinates   803067..804794 (+) Length   575 a.a.
NCBI ID   WP_013059135.1    Uniprot ID   -
Organism   Priestia megaterium strain HT517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 798067..809794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N01_RS06145 (J8N01_06065) - 798264..798497 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  J8N01_RS06150 (J8N01_06070) - 798497..799393 (+) 897 WP_035438726.1 polyprenyl synthetase family protein -
  J8N01_RS06155 (J8N01_06075) dxs 799757..801615 (+) 1859 Protein_803 1-deoxy-D-xylulose-5-phosphate synthase -
  J8N01_RS06160 (J8N01_06080) - 801612..802439 (+) 828 WP_053487733.1 TlyA family RNA methyltransferase -
  J8N01_RS06165 (J8N01_06085) ahrC 802601..803050 (+) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  J8N01_RS06170 (J8N01_06090) recN 803067..804794 (+) 1728 WP_013059135.1 DNA repair protein RecN Machinery gene
  J8N01_RS06175 (J8N01_06095) spoIVB 804977..806257 (+) 1281 WP_013059134.1 SpoIVB peptidase -
  J8N01_RS06180 (J8N01_06100) spo0A 806485..807273 (+) 789 WP_013059133.1 sporulation transcription factor Spo0A -
  J8N01_RS06185 (J8N01_06105) - 807665..808996 (-) 1332 WP_013059131.1 peptide MFS transporter -
  J8N01_RS06190 (J8N01_06110) - 809310..809462 (-) 153 WP_013059130.1 YycC family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64706.27 Da        Isoelectric Point: 4.8309

>NTDB_id=558904 J8N01_RS06170 WP_013059135.1 803067..804794(+) (recN) [Priestia megaterium strain HT517]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVELNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=558904 J8N01_RS06170 WP_013059135.1 803067..804794(+) (recN) [Priestia megaterium strain HT517]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCCGAGT
TTGTACGCCACGGAACAGACAGAGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
TCGCATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTCGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTAGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATATGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAACAGTTAAACAGTGTAGCACAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAATTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACCAATCCTGGTGAACCTTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCTATTTCTGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
TCAGGTAGCAGCGATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACATCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.757

100

0.649