Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2Z38_RS10205 Genome accession   NZ_CP091339
Coordinates   2130841..2131476 (-) Length   211 a.a.
NCBI ID   WP_000264036.1    Uniprot ID   A0A7U3Y6I5
Organism   Acinetobacter baumannii strain AB229-VUB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2125841..2136476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z38_RS10180 (L2Z38_10180) - 2125897..2126877 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  L2Z38_RS10185 (L2Z38_10185) kdsB 2126889..2127650 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z38_RS10190 (L2Z38_10190) lpxK 2127660..2128670 (-) 1011 WP_000050479.1 tetraacyldisaccharide 4'-kinase -
  L2Z38_RS10195 (L2Z38_10195) msbA 2128673..2130400 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  L2Z38_RS10200 (L2Z38_10200) - 2130397..2130825 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  L2Z38_RS10205 (L2Z38_10205) exbB 2130841..2131476 (-) 636 WP_000264036.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Z38_RS10210 (L2Z38_10210) - 2131526..2132413 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  L2Z38_RS10215 (L2Z38_10215) - 2132410..2133192 (-) 783 WP_000057212.1 ParA family protein -
  L2Z38_RS10220 (L2Z38_10220) rsmG 2133214..2133846 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L2Z38_RS10225 (L2Z38_10225) murU 2133934..2134623 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L2Z38_RS10230 (L2Z38_10230) - 2134623..2135636 (-) 1014 WP_001096103.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23212.13 Da        Isoelectric Point: 6.4861

>NTDB_id=558872 L2Z38_RS10205 WP_000264036.1 2130841..2131476(-) (exbB) [Acinetobacter baumannii strain AB229-VUB]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558872 L2Z38_RS10205 WP_000264036.1 2130841..2131476(-) (exbB) [Acinetobacter baumannii strain AB229-VUB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y6I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393