Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KDJ92_RS10900 Genome accession   NZ_CP073283
Coordinates   2344038..2345876 (-) Length   612 a.a.
NCBI ID   WP_212104047.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain BINF     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339038..2350876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ92_RS10875 (KDJ92_10875) - 2340155..2340802 (+) 648 WP_032743824.1 hypothetical protein -
  KDJ92_RS13010 - 2340793..2341170 (+) 378 WP_179960175.1 hypothetical protein -
  KDJ92_RS10885 (KDJ92_10885) rsmI 2341197..2342207 (-) 1011 WP_041982173.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KDJ92_RS10895 (KDJ92_10895) - 2342771..2343886 (+) 1116 WP_212104045.1 FAD:protein FMN transferase -
  KDJ92_RS10900 (KDJ92_10900) rcrQ 2344038..2345876 (-) 1839 WP_212104047.1 ABC transporter ATP-binding protein Regulator
  KDJ92_RS10905 (KDJ92_10905) rcrP 2345945..2347816 (-) 1872 WP_212104049.1 ABC transporter ATP-binding protein Regulator
  KDJ92_RS10910 (KDJ92_10910) - 2348051..2348581 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  KDJ92_RS10915 (KDJ92_10915) - 2348726..2350249 (-) 1524 WP_212104051.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 66981.41 Da        Isoelectric Point: 6.5649

>NTDB_id=558850 KDJ92_RS10900 WP_212104047.1 2344038..2345876(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain BINF]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=558850 KDJ92_RS10900 WP_212104047.1 2344038..2345876(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain BINF]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGCCTGCCCGCCATCGTCAACGGCAGGCCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACGCTGGTGGCCCTGTACGCGGGATACGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCGCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGTCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCACA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGTGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTACAGTTCGGTTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGG
CGGCTCGATTGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCAACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGATGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAACG
CGGCACCCATGACGAGCTGCTGGCTGCGGGCGGCTTTTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.252

96.078

0.521