Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KDJ92_RS10905 Genome accession   NZ_CP073283
Coordinates   2345945..2347816 (-) Length   623 a.a.
NCBI ID   WP_212104049.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain BINF     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2348051..2359248 2345945..2347816 flank 235


Gene organization within MGE regions


Location: 2345945..2359248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ92_RS10905 (KDJ92_10905) rcrP 2345945..2347816 (-) 1872 WP_212104049.1 ABC transporter ATP-binding protein Regulator
  KDJ92_RS10910 (KDJ92_10910) - 2348051..2348581 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  KDJ92_RS10915 (KDJ92_10915) - 2348726..2350249 (-) 1524 WP_212104051.1 amino acid permease -
  KDJ92_RS10920 (KDJ92_10920) - 2350437..2354057 (-) 3621 WP_212105763.1 FtsX-like permease family protein -
  KDJ92_RS10925 (KDJ92_10925) - 2354146..2354847 (-) 702 WP_012578658.1 ABC transporter ATP-binding protein -
  KDJ92_RS10930 (KDJ92_10930) - 2355094..2356575 (+) 1482 WP_212104053.1 amino acid permease -
  KDJ92_RS10935 (KDJ92_10935) - 2356723..2357358 (-) 636 WP_212104055.1 YesL family protein -
  KDJ92_RS10940 (KDJ92_10940) - 2357552..2358394 (-) 843 WP_071474542.1 carbohydrate ABC transporter permease -
  KDJ92_RS10945 (KDJ92_10945) - 2358394..2359248 (-) 855 WP_212104057.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68015.61 Da        Isoelectric Point: 5.6416

>NTDB_id=558851 KDJ92_RS10905 WP_212104049.1 2345945..2347816(-) (rcrP) [Bifidobacterium longum subsp. infantis strain BINF]
MFRIMKYLSKSEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEGYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMMDSSTASGRKHETALLAADKAAQDAGLPA
ERMERVKAAADVAQASEFVARMDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=558851 KDJ92_RS10905 WP_212104049.1 2345945..2347816(-) (rcrP) [Bifidobacterium longum subsp. infantis strain BINF]
ATGTTCCGCATCATGAAATACCTCTCCAAATCGGAGATCGGTCAGATGCTCGTCGCCCTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCATCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCATCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCTCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
GCTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGTCTGATGCTCGCCGTCTATTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGCTTCACCTACCCGGACTCACGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGATCCACCGGCTCCGGCAAATCGTCGCTGATCAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGATGGACA
GCTCCACCGCCTCCGGCCGCAAGCACGAGACCGCACTGCTCGCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCATGGACGGCGGATACGC
CGCCGCGATCGCACAGGGTGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCCACCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(54-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.341

100

0.491