Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KDJ93_RS09800 Genome accession   NZ_CP073277
Coordinates   2064458..2065411 (-) Length   317 a.a.
NCBI ID   WP_033127883.1    Uniprot ID   -
Organism   Clostridium butyricum strain CBUT     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2059458..2070411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ93_RS09780 (KDJ93_09780) tyrS 2059664..2060869 (-) 1206 WP_211944533.1 tyrosine--tRNA ligase -
  KDJ93_RS09785 (KDJ93_09785) - 2061661..2062599 (-) 939 WP_033127881.1 siderophore ABC transporter substrate-binding protein -
  KDJ93_RS09790 (KDJ93_09790) - 2062676..2063431 (-) 756 WP_002579998.1 ATP-binding cassette domain-containing protein -
  KDJ93_RS09795 (KDJ93_09795) - 2063512..2064468 (-) 957 WP_033127882.1 iron chelate uptake ABC transporter family permease subunit -
  KDJ93_RS09800 (KDJ93_09800) ceuB 2064458..2065411 (-) 954 WP_033127883.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  KDJ93_RS09805 (KDJ93_09805) - 2065746..2066054 (-) 309 WP_002579995.1 hypothetical protein -
  KDJ93_RS09810 (KDJ93_09810) - 2066120..2067619 (-) 1500 WP_003427750.1 sodium:solute symporter family protein -
  KDJ93_RS09815 (KDJ93_09815) - 2067669..2068622 (-) 954 WP_003427752.1 L-lactate dehydrogenase -
  KDJ93_RS09820 (KDJ93_09820) - 2068877..2069374 (-) 498 WP_002579992.1 hypothetical protein -
  KDJ93_RS09825 (KDJ93_09825) - 2069610..2070290 (+) 681 WP_002579991.1 TIGR00266 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34523.82 Da        Isoelectric Point: 10.0188

>NTDB_id=558821 KDJ93_RS09800 WP_033127883.1 2064458..2065411(-) (ceuB) [Clostridium butyricum strain CBUT]
MSKKILIPMFIILCIISLFIGVNDISVMDIINFDSEKINILLISRLPRLVGLVVAGVGMSIGGVIMQQISNNKFVSPTTA
ATLDSAQFGVIVAMMIFPVASLTQKMIVAFIFSLIGTFLFMGILKKIKMKNAIFIPLVGIMVGNVIGSLTEFIAYKNNLV
QNVGSFFQGKFALVIKGNYEMLYFTIPLLIVAFMYANKFTIIGMGEDISKNLGLDYKKVSNIGITIVALVSALVIITVGN
IPFIGLIVPNLVSLFNGDNVSKNIGITALFGANFVILCDIIGRLVIYPYEVSISLTVGVIGSIIFLYLILRRNRNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=558821 KDJ93_RS09800 WP_033127883.1 2064458..2065411(-) (ceuB) [Clostridium butyricum strain CBUT]
ATGAGTAAAAAAATATTAATACCGATGTTTATTATATTGTGTATAATTTCACTGTTCATTGGAGTGAACGACATATCAGT
AATGGATATAATAAACTTTGATAGTGAGAAAATAAATATTTTATTGATAAGCAGATTACCAAGACTTGTTGGGCTTGTTG
TTGCTGGTGTTGGAATGAGTATCGGTGGAGTGATAATGCAGCAGATAAGTAACAACAAATTTGTATCACCCACAACAGCA
GCAACTCTTGATTCAGCACAATTTGGTGTAATTGTAGCTATGATGATTTTCCCAGTTGCATCTTTAACGCAAAAGATGAT
TGTAGCCTTTATATTTTCACTTATAGGAACATTTTTATTTATGGGAATTCTAAAAAAGATAAAGATGAAAAATGCCATAT
TCATACCACTTGTAGGGATTATGGTTGGAAATGTTATCGGATCACTTACAGAGTTTATAGCCTATAAGAATAACCTTGTT
CAAAATGTGGGATCTTTCTTTCAAGGTAAATTTGCACTTGTGATTAAAGGAAATTATGAAATGCTATATTTCACTATTCC
TTTGCTTATAGTGGCATTTATGTATGCAAACAAATTTACAATAATAGGTATGGGAGAAGATATTTCAAAAAATCTAGGTC
TTGATTATAAGAAAGTCAGTAATATTGGAATTACCATAGTGGCATTAGTTAGTGCACTGGTTATTATAACAGTAGGTAAT
ATACCATTTATAGGTTTAATTGTTCCCAATTTAGTATCACTTTTTAATGGAGATAATGTAAGTAAAAATATAGGAATTAC
AGCTTTGTTTGGAGCAAATTTTGTGATTTTATGTGACATAATTGGAAGACTTGTAATTTATCCATATGAGGTTTCAATAA
GTCTTACTGTAGGAGTTATAGGAAGTATAATATTCCTTTATTTAATATTAAGGAGAAATAGAAATGAAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483