Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   KCL43_RS10520 Genome accession   NZ_CP073275
Coordinates   51013..51111 (+) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 46013..56111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS00275 (KCL43_00275) - 47060..47281 (+) 222 WP_043024883.1 hypothetical protein -
  KCL43_RS00280 (KCL43_00280) - 47333..48406 (+) 1074 WP_043024885.1 YaaC family protein -
  KCL43_RS00285 (KCL43_00285) purB 48425..49717 (+) 1293 WP_165623356.1 adenylosuccinate lyase -
  KCL43_RS00290 (KCL43_00290) comR 50016..50930 (+) 915 WP_165623357.1 helix-turn-helix domain-containing protein Regulator
  KCL43_RS10520 (KCL43_00295) comS 51013..51111 (+) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  KCL43_RS00300 (KCL43_00300) ruvB 51145..52146 (+) 1002 WP_165623358.1 Holliday junction branch migration DNA helicase RuvB -
  KCL43_RS00305 (KCL43_00305) - 52440..52898 (+) 459 WP_012514717.1 low molecular weight protein-tyrosine-phosphatase -
  KCL43_RS00310 (KCL43_00310) - 52904..53305 (+) 402 WP_012514718.1 MORN repeat-containing protein -
  KCL43_RS00315 (KCL43_00315) - 53302..55083 (+) 1782 WP_111721605.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=558812 KCL43_RS10520 WP_021320241.1 51013..51111(+) (comS) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=558812 KCL43_RS10520 WP_021320241.1 51013..51111(+) (comS) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375