Detailed information NTG0558735

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: KC397_RS13885
• Genome accession: NZ_CP073273
• Coordinates: 2938194..2939198 (-)
• Length: 334 a.a.
• NCBI ID: WP_212570869.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 19-VB00936
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2933194..2944198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KC397_RS13860 (KC397_13860)	aroK	2934062..2934580 (-)	519	WP_004728569.1	shikimate kinase AroK	-
KC397_RS13865 (KC397_13865)	pilQ	2934768..2936504 (-)	1737	WP_233921186.1	type IV pilus secretin PilQ family protein	Machinery gene
KC397_RS13870 (KC397_13870)	pilP	2936529..2937041 (-)	513	WP_020429290.1	pilus assembly protein PilP	Machinery gene
KC397_RS13875 (KC397_13875)	pilO	2937031..2937621 (-)	591	WP_020429291.1	type 4a pilus biogenesis protein PilO	Machinery gene
KC397_RS13880 (KC397_13880)	pilN	2937614..2938204 (-)	591	WP_212570868.1	PilN domain-containing protein	Machinery gene
KC397_RS13885 (KC397_13885)	pilM	2938194..2939198 (-)	1005	WP_212570869.1	type IV pilus assembly protein PilM	Machinery gene
KC397_RS13890 (KC397_13890)	-	2939341..2941821 (+)	2481	WP_212570870.1	PBP1A family penicillin-binding protein	-
KC397_RS13895 (KC397_13895)	oxyR	2941882..2942778 (-)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
KC397_RS13900 (KC397_13900)	-	2942922..2943656 (+)	735	WP_020329437.1	glutathione peroxidase	-
KC397_RS13905 (KC397_13905)	-	2943786..2944049 (+)	264	WP_020429299.1	DUF3624 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36831.14 Da
• Isoelectric Point: 6.6959

>NTDB_id=558735 KC397_RS13885 WP_212570869.1 2938194..2939198(-) (pilM) [Vibrio fluvialis strain 19-VB00936]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFAVTGEKTLGRSSSLTYQVYATRREVIDNRLSAVSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKTPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQD
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLVLPCELFNPLAEFTCRASLRRQPQVDLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=558735 KC397_RS13885 WP_212570869.1 2938194..2939198(-) (pilM) [Vibrio fluvialis strain 19-VB00936]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCCCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGCTGTTACCGGAGAAAAAACACTAGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGGTGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGCCTGCTCAATATCTGGCAATGGGTCAGCCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTTGATGTCGGGTTCAGTCAAACCTCATTGTGCATCGACTTTGCCGATAAAACGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAT
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGCCATCAGCCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGTTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCGCCAGCCTCAGGTTGATTTGCAGCGTTTTAGCACTGCGGCAGGCTTG
GCGCTGCGCGGGCTCAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.385	100	0.662
pilM	Vibrio campbellii strain DS40M4	47.536	100	0.491