Detailed information NTG0558725

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: KC397_RS12375
• Genome accession: NZ_CP073273
• Coordinates: 2617955..2621344 (+)
• Length: 1129 a.a.
• NCBI ID: WP_212570717.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 19-VB00936
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2612955..2626344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KC397_RS12350 (KC397_12350)	erpA	2613350..2613691 (-)	342	WP_020332030.1	iron-sulfur cluster insertion protein ErpA	-
KC397_RS12355 (KC397_12355)	hemL	2614000..2615292 (+)	1293	WP_032082210.1	glutamate-1-semialdehyde 2,1-aminomutase	-
KC397_RS12360 (KC397_12360)	-	2615362..2615520 (-)	159	WP_154184033.1	hypothetical protein	-
KC397_RS12365 (KC397_12365)	-	2615557..2616642 (+)	1086	WP_020332027.1	AI-2E family transporter	-
KC397_RS12370 (KC397_12370)	rsmC	2616728..2617750 (+)	1023	WP_024373683.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
KC397_RS12375 (KC397_12375)	chiS	2617955..2621344 (+)	3390	WP_212570717.1	response regulator	Regulator
KC397_RS12380 (KC397_12380)	-	2622039..2623709 (+)	1671	WP_020332024.1	ABC transporter substrate-binding protein	-
KC397_RS12385 (KC397_12385)	-	2623875..2624861 (+)	987	WP_020332023.1	ABC transporter permease	-
KC397_RS12390 (KC397_12390)	-	2624864..2625889 (+)	1026	WP_158130005.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127909.59 Da
• Isoelectric Point: 6.5462

>NTDB_id=558725 KC397_RS12375 WP_212570717.1 2617955..2621344(+) (chiS) [Vibrio fluvialis strain 19-VB00936]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGIDIDQAREHAQQRYVPGSGDQIKTSVLPESSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDINGNVVYSIFKNANYGTNLLTGKFKDSNLGQTFRQLEKQVSEHRKTNEDYTPVVLSDFVDENGRQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNSTSSMRTLLVGQDHRSRTLAYEQPEIDKSTQVIDWALNGSRSVGTYTNQAGEK
TIAAYAPINLKDLHWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDINRTAVNLSNATRLVLELSNHLLGKKPIRI
INQVAENPVWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISANQVDNHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDTS
RYRQGAGLGLSISRQLIELMHGSLYVSSQPMVGTTFSFTLPIASEQEIAAAQLTQLPHFQAPEFTELDLPENHSIPENPN
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLKAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAQLPVIM
LTALNQTDDRVRGFEAGANDYLSKPFNKQELAARIIAHLTASKAEQRRIENAELQKELKHRAMVEASLLETQGRLLEQLE
SAPEAIVCIREDHKIRFANEAASRLFKRSQEQIKRSNADELIAPKYLLVEQEHYCGNVDIFVDDIRQHVNADVLRLPEGA
GLQAMYIFNVGGSINAARIHNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGYSQSKQDLMRAVLVDAMTSA
LNYWEKVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=558725 KC397_RS12375 WP_212570717.1 2617955..2621344(+) (chiS) [Vibrio fluvialis strain 19-VB00936]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAGAATACTCTTATGCTGGCGTTCCTGGTTCTCAGCATCAC
CCCTCTGACGGTGACGGCAATCTTTTTCCTTCAATCTCACAGTAAAGACTTGCAGGAACAAAGCACATCGCACCTTCTGT
CAGTGCGGGATACCAAACAGCAGCAAGTAATCGACTACCTCACGGCTAAAGAGTCTGAAGTGATGGGCTTTGTCCGCTCA
GAACTTGCTTACGCCAGTGGAGGTCGCTTCTATGGATTGGTCAACGCATTTCAGCGCTTGGGAATCGATATCGATCAGGC
GCGCGAGCATGCGCAGCAACGTTATGTACCGGGCTCCGGCGACCAAATCAAAACCTCCGTGTTACCAGAGTCGAGCAGTT
ACGTCGGCAGCGAACGCTATCGCTTGTTGCATAAACGCTACCACTGGGCGTATATGGAACTGCTTAAGCGTTCCGATTTT
GACGATATTCTGTTGGTCGATATCAACGGAAACGTGGTGTATTCCATTTTTAAAAATGCCAACTACGGCACCAACCTGCT
GACGGGCAAATTTAAAGACAGTAATCTGGGTCAAACCTTCCGCCAACTAGAAAAGCAGGTCAGCGAACACCGTAAAACCA
ATGAAGATTACACCCCTGTCGTACTGTCTGATTTTGTTGATGAAAATGGCCGTCAATATGCGTGGATGGGTGCACCAATC
ATTCAGCAAGGCTACTTGCACAGTTATGCGATGTTCCGCCTGCCCAATAATGGCATTACCAAGCTGATTGCAGATACCAA
CAGCACCTCTTCAATGCGCACTCTGTTGGTCGGCCAGGATCATCGCTCGCGTACCCTCGCTTACGAGCAACCAGAGATCG
ATAAGAGTACTCAAGTGATTGATTGGGCGCTGAACGGCAGTCGTTCTGTTGGCACTTATACTAATCAGGCCGGGGAAAAA
ACCATCGCCGCCTACGCCCCTATCAACCTCAAAGATTTGCATTGGGCACTGGTGGTTGAACTACCAGAAAAAGAGGCCTT
TGCGCGCGTCCGTCAGTTGGAGAAGCTGTTCATCTTCGCCATGCTGACCGCAATTATTTTGGTGGTGATCGCCTCACATT
ATCTGTCTAACTTCATTACATCTCCGCTCCTTAAACTGACCTGGGCAGCGGAACGTGTCTCCGCTGGCGACTTGGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGTCGGTTGGCGGTGAGTTTTGAACGTATGCAACGCTCTATTCGCGA
GAAGATGCAACTGATTAAGGCGCAGAATAAAGAGTTGGAAAGCAATATTCAGGTCATTCGTAAACAGAACGATGAATTGC
AGTTGGCCAACAAACTGAAAGATGAGTTTCTCGCCACAACTTCGCATGAACTCAGAACGCCTTTGCATGGCATGATCGGA
ATTGCCGAGGCGCTGATTTCCGGCGCCAATGGCCCTATTAATGCGGCACACAAGTATCAGCTCGACATTATCATCAGTAG
CGGTCAACGACTGGCCACCTTGGTGGATGACTTGCTCGACTACCACAAAATGCGCTACGGCAATCTCGACATCAACAGGA
CTGCGGTTAATCTGTCCAATGCCACGCGTTTGGTGCTGGAACTGTCTAATCATCTGTTGGGCAAAAAGCCAATCCGCATT
ATTAACCAAGTCGCCGAAAATCCGGTGTGGGTATCTGCCGATGCCCAGCGTTTGGAACAGGTGTTGTACAACCTGATCGG
CAACGCCATCAAATACACCTCGGAAGGTAAGATTGTCATCTCAGCCAATCAAGTGGATAACCATATTCGCGTTCAGGTCG
TGGATACCGGGCAAGGTATTCCGGCCGAACAGCTGGAACACATTTTTGAACCTCTGATTCAAGCCGGACATGACACTAGC
CGCTATCGTCAGGGGGCAGGACTGGGACTCTCCATCAGCCGTCAGTTAATTGAGTTGATGCATGGCTCGCTGTATGTCAG
CAGCCAACCTATGGTTGGCACTACCTTTAGTTTCACCCTGCCAATCGCGTCAGAACAAGAGATTGCTGCCGCACAACTGA
CGCAGCTACCCCATTTCCAGGCTCCTGAATTTACGGAACTGGATCTGCCTGAGAATCATAGCATTCCGGAAAATCCGAAC
GGCCCACTGCTGTTAGTCGCGGATGATGAGCCGGTTAACTTACGTGTTCTGGACAGCTTCCTGCGTTTAGAAGGCTATCG
TGTACGCACCGCACAGGATGGCAATGAAGTGTTGAAAGCTGTGGCTGAAGAGAAACCAGAGCTGCTATTACTCGACATCA
TGATGCCCGGTATGAGCGGTTATCAGGTTTGTGAAGAGCTGCGTAAAACGTATGATCACGCTCAATTACCAGTAATTATG
CTGACCGCTCTGAATCAAACCGACGATCGCGTACGAGGCTTTGAAGCGGGTGCCAACGACTACCTGTCCAAACCTTTCAA
CAAACAGGAACTGGCTGCACGTATTATCGCGCACCTGACAGCAAGCAAAGCAGAACAACGTCGGATTGAAAACGCCGAGT
TGCAGAAAGAATTGAAGCACCGCGCGATGGTTGAGGCCAGTTTGCTGGAAACACAAGGACGTTTGTTGGAACAGCTGGAA
TCGGCACCGGAAGCCATTGTTTGTATTCGTGAAGATCACAAAATCCGCTTTGCCAATGAAGCTGCTTCGCGCCTGTTTAA
ACGCAGTCAGGAGCAAATCAAGCGTTCTAACGCAGATGAGTTGATCGCTCCGAAGTATCTGCTGGTCGAACAGGAACATT
ATTGCGGCAACGTCGATATTTTTGTTGATGATATTCGGCAACACGTCAATGCTGATGTCCTCCGTCTGCCAGAAGGCGCC
GGATTACAGGCAATGTATATCTTTAATGTGGGTGGTAGCATTAACGCTGCGCGTATTCATAACCTTGAAACCGCCGTTGA
AGCCCTGTCGAGCTATGCCTTTGAAGGCGACAAGGATAAGCTGCAGCAACTCAAAGAACTGGGGGGAGAATTTACCCGTC
TGGCAGACAAAGCCTCAGGTTACAGCCAATCTAAGCAGGACTTGATGCGCGCTGTCTTGGTGGATGCGATGACATCAGCC
CTCAACTATTGGGAGAAAGTTTCCGGGCAAAGTAAATTCACGTTCGCAGAACAAAGTGGGTTATGGCGCGTCTATCTGGA
CCGAAGCACGCTTCAGACCCGCACACTCGACAAGTATCTGCGTATCGAAACACTGCCTAAAACACCGCGGTGGCGCACGG
TACTCAATTCGCTGGATTACATTCTCGACCACTGTCAGGAACAGGGGCCTGAACGTACCTACATTGAAGTACAACGCGAT
AAACTGCAAAAGCTGCTCACCTCTGAATAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• Response regulator receiver domain (Response_reg) (725-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.854	100	0.849