Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KC397_RS05955 Genome accession   NZ_CP073273
Coordinates   1289989..1291413 (-) Length   474 a.a.
NCBI ID   WP_212571572.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284989..1296413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS05935 (KC397_05935) - 1285059..1287767 (+) 2709 WP_158151204.1 EAL domain-containing protein -
  KC397_RS05940 (KC397_05940) cdd 1287814..1288701 (-) 888 WP_020432570.1 cytidine deaminase -
  KC397_RS05945 (KC397_05945) - 1288903..1289583 (-) 681 WP_212571571.1 LrgB family protein -
  KC397_RS05950 (KC397_05950) - 1289574..1289948 (-) 375 WP_020327588.1 CidA/LrgA family protein -
  KC397_RS05955 (KC397_05955) sbcB 1289989..1291413 (-) 1425 WP_212571572.1 exodeoxyribonuclease I Machinery gene
  KC397_RS05960 (KC397_05960) - 1291651..1291863 (+) 213 WP_075989234.1 hypothetical protein -
  KC397_RS05965 (KC397_05965) - 1291943..1293322 (-) 1380 WP_020432565.1 L-cystine transporter -
  KC397_RS05970 (KC397_05970) - 1293523..1294206 (-) 684 WP_212571573.1 NAD(P)H-binding protein -
  KC397_RS05975 (KC397_05975) - 1294591..1295202 (+) 612 WP_212571575.1 flavin reductase family protein -
  KC397_RS05980 (KC397_05980) cobT 1295216..1296244 (+) 1029 WP_212571578.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54400.85 Da        Isoelectric Point: 5.1492

>NTDB_id=558723 KC397_RS05955 WP_212571572.1 1289989..1291413(-) (sbcB) [Vibrio fluvialis strain 19-VB00936]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAVLFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPDLLGELDITFSDK
RIEPLLFRYRARNCPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=558723 KC397_RS05955 WP_212571572.1 1289989..1291413(-) (sbcB) [Vibrio fluvialis strain 19-VB00936]
ATGCAGCAGCAGCACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGTA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTACCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTTTATATACCCGTCACGATGACTTAGCACCGGACGAACTGC
CTGTGCCCGTCAAACTGGTCCATCTCAACAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCTGAAATTCGAGAGAAGCTGGC
AGTCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGATCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTGCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831