Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KC397_RS04265 Genome accession   NZ_CP073273
Coordinates   916375..917736 (+) Length   453 a.a.
NCBI ID   WP_024373970.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 911375..922736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS04245 (KC397_04245) rsxB 911988..912587 (-) 600 WP_020327943.1 electron transport complex subunit RsxB -
  KC397_RS04250 (KC397_04250) rsxA 912587..913168 (-) 582 WP_004726646.1 electron transport complex subunit RsxA -
  KC397_RS04260 (KC397_04260) uvrB 914058..916088 (+) 2031 WP_212571367.1 excinuclease ABC subunit UvrB -
  KC397_RS04265 (KC397_04265) luxO 916375..917736 (+) 1362 WP_024373970.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  KC397_RS04270 (KC397_04270) luxU 917743..918081 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  KC397_RS04275 (KC397_04275) - 918070..918960 (-) 891 WP_154184636.1 YvcK family protein -
  KC397_RS04280 (KC397_04280) moaA 919271..920260 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  KC397_RS04285 (KC397_04285) moaB 920332..920844 (+) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  KC397_RS04290 (KC397_04290) moaC 920854..921333 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  KC397_RS04295 (KC397_04295) moaD 921330..921575 (+) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  KC397_RS04300 (KC397_04300) moaE 921577..922032 (+) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50275.49 Da        Isoelectric Point: 5.5480

>NTDB_id=558715 KC397_RS04265 WP_024373970.1 916375..917736(+) (luxO) [Vibrio fluvialis strain 19-VB00936]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=558715 KC397_RS04265 WP_024373970.1 916375..917736(+) (luxO) [Vibrio fluvialis strain 19-VB00936]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACTGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGTGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGTGCGACCAACCGCGACCCATGGAAAGAAGTGCAGGAAGGACGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAACGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTCAAACAATACGAATGGCC
GGGCAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCTTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901