Detailed information NTG0558709

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KC397_RS02335
• Genome accession: NZ_CP073273
• Coordinates: 494287..495273 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 19-VB00936
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 489287..500273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KC397_RS02300 (KC397_02300)	ftsB	489356..489637 (+)	282	WP_020330423.1	cell division protein FtsB	-
KC397_RS02305 (KC397_02305)	ispD	489634..490344 (+)	711	WP_212571209.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KC397_RS02310 (KC397_02310)	ispF	490347..490823 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KC397_RS02315 (KC397_02315)	truD	490855..491901 (+)	1047	WP_212571211.1	tRNA pseudouridine(13) synthase TruD	-
KC397_RS02320 (KC397_02320)	surE	491894..492661 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
KC397_RS02325 (KC397_02325)	-	492654..493280 (+)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KC397_RS02330 (KC397_02330)	nlpD	493280..494215 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
KC397_RS02335 (KC397_02335)	rpoS	494287..495273 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
KC397_RS02340 (KC397_02340)	mutS	495342..497903 (-)	2562	WP_212571213.1	DNA mismatch repair protein MutS	-
KC397_RS02345 (KC397_02345)	pncC	497988..498476 (+)	489	WP_158146859.1	nicotinamide-nucleotide amidase	-
KC397_RS02350 (KC397_02350)	recA	498649..499701 (+)	1053	WP_020330433.1	recombinase RecA	Machinery gene
KC397_RS02355 (KC397_02355)	recX	499771..500229 (+)	459	WP_055452611.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=558709 KC397_RS02335 WP_020429689.1 494287..495273(+) (rpoS) [Vibrio fluvialis strain 19-VB00936]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=558709 KC397_RS02335 WP_020429689.1 494287..495273(+) (rpoS) [Vibrio fluvialis strain 19-VB00936]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAGCTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGCTTGTTGGGCTATGAACCTTCTACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGTCGTCTAAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887