Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KCX77_RS13955 Genome accession   NZ_CP073265
Coordinates   2784555..2785301 (-) Length   248 a.a.
NCBI ID   WP_010789379.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779555..2790301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS13930 (KCX77_13930) mreC 2779951..2780823 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  KCX77_RS13935 (KCX77_13935) mreB 2780854..2781867 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  KCX77_RS13940 (KCX77_13940) radC 2781959..2782654 (-) 696 WP_003325238.1 DNA repair protein RadC -
  KCX77_RS13945 (KCX77_13945) - 2782689..2783258 (-) 570 WP_010789377.1 Maf family nucleotide pyrophosphatase -
  KCX77_RS13950 (KCX77_13950) - 2783405..2784421 (-) 1017 WP_010789378.1 SPOR domain-containing protein -
  KCX77_RS13955 (KCX77_13955) comC 2784555..2785301 (-) 747 WP_010789379.1 A24 family peptidase Machinery gene
  KCX77_RS13960 (KCX77_13960) - 2785455..2786750 (-) 1296 WP_212063669.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KCX77_RS13965 (KCX77_13965) valS 2786808..2789450 (-) 2643 WP_212063670.1 valine--tRNA ligase -
  KCX77_RS13970 (KCX77_13970) - 2789897..2790088 (+) 192 WP_010789382.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26812.49 Da        Isoelectric Point: 9.1068

>NTDB_id=558652 KCX77_RS13955 WP_010789379.1 2784555..2785301(-) (comC) [Bacillus atrophaeus strain CNY01]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSFCSFCRNPLSYAELIPVFSFFLQKGRCKSCSQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAIY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=558652 KCX77_RS13955 WP_010789379.1 2784555..2785301(-) (comC) [Bacillus atrophaeus strain CNY01]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACCGCGCTCCTTCTGTTCATTTTGCCGCAATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTTCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCCGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGTTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATATACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617