Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KCX77_RS13095 Genome accession   NZ_CP073265
Coordinates   2626428..2627195 (-) Length   255 a.a.
NCBI ID   WP_088117596.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2621428..2632195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS13075 (KCX77_13075) - 2621586..2622398 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  KCX77_RS13080 (KCX77_13080) ccpN 2622424..2623062 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  KCX77_RS13085 (KCX77_13085) glyS 2623210..2625249 (-) 2040 WP_106046757.1 glycine--tRNA ligase subunit beta -
  KCX77_RS13090 (KCX77_13090) glyQ 2625242..2626129 (-) 888 WP_010789234.1 glycine--tRNA ligase subunit alpha -
  KCX77_RS13095 (KCX77_13095) recO 2626428..2627195 (-) 768 WP_088117596.1 DNA repair protein RecO Machinery gene
  KCX77_RS13100 (KCX77_13100) - 2627232..2627375 (-) 144 WP_004429487.1 YqzL family protein -
  KCX77_RS13105 (KCX77_13105) era 2627531..2628436 (-) 906 WP_004429485.1 GTPase Era -
  KCX77_RS13110 (KCX77_13110) - 2628417..2628827 (-) 411 WP_010789236.1 cytidine deaminase -
  KCX77_RS13115 (KCX77_13115) - 2628941..2629318 (-) 378 WP_106046758.1 diacylglycerol kinase family protein -
  KCX77_RS13120 (KCX77_13120) ybeY 2629299..2629772 (-) 474 WP_010789237.1 rRNA maturation RNase YbeY -
  KCX77_RS13125 (KCX77_13125) - 2629773..2631908 (-) 2136 WP_004429478.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=558644 KCX77_RS13095 WP_088117596.1 2626428..2627195(-) (recO) [Bacillus atrophaeus strain CNY01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=558644 KCX77_RS13095 WP_088117596.1 2626428..2627195(-) (recO) [Bacillus atrophaeus strain CNY01]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTATGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGTTTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAGGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.941

100

0.929