Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KCX77_RS12570 Genome accession   NZ_CP073265
Coordinates   2535763..2536560 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530763..2541560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS12545 (KCX77_12545) - 2531198..2531941 (-) 744 WP_212063614.1 glycerophosphodiester phosphodiesterase -
  KCX77_RS12550 (KCX77_12550) - 2532053..2532676 (-) 624 WP_010789171.1 N-acetylmuramoyl-L-alanine amidase -
  KCX77_RS12555 (KCX77_12555) - 2532699..2533001 (-) 303 WP_003325487.1 hypothetical protein -
  KCX77_RS12560 (KCX77_12560) - 2533455..2534573 (+) 1119 WP_144414337.1 NADH-dependent flavin oxidoreductase -
  KCX77_RS12565 (KCX77_12565) - 2534738..2535595 (+) 858 WP_010789173.1 manganese catalase family protein -
  KCX77_RS12570 (KCX77_12570) spo0A 2535763..2536560 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  KCX77_RS12575 (KCX77_12575) spoIVB 2536843..2538123 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  KCX77_RS12580 (KCX77_12580) recN 2538318..2540048 (-) 1731 WP_010789175.1 DNA repair protein RecN Machinery gene
  KCX77_RS12585 (KCX77_12585) argR 2540083..2540532 (-) 450 WP_003325480.1 arginine repressor ArgR -
  KCX77_RS12590 (KCX77_12590) - 2540631..2541476 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=558633 KCX77_RS12570 WP_010789174.1 2535763..2536560(-) (spo0A) [Bacillus atrophaeus strain CNY01]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=558633 KCX77_RS12570 WP_010789174.1 2535763..2536560(-) (spo0A) [Bacillus atrophaeus strain CNY01]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGCCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTACCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATAGAATT
GCTCGGCAGCATCACGAAAGTGCTCTATCCCGATATCGCCAAAAAATTCAACACCACCGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCAATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974