Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KCX77_RS08305 Genome accession   NZ_CP073265
Coordinates   1607448..1607726 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602448..1612726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS08285 (KCX77_08285) - 1603642..1604556 (+) 915 WP_212064535.1 ketopantoate reductase family protein -
  KCX77_RS08290 (KCX77_08290) - 1604588..1605820 (-) 1233 WP_212064536.1 aminopeptidase -
  KCX77_RS08295 (KCX77_08295) - 1605922..1606056 (-) 135 WP_010788482.1 protein YkpC -
  KCX77_RS08300 (KCX77_08300) mreBH 1606158..1607165 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  KCX77_RS08305 (KCX77_08305) abrB 1607448..1607726 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  KCX77_RS08310 (KCX77_08310) - 1607939..1609225 (+) 1287 WP_106046419.1 ATP-binding protein -
  KCX77_RS08315 (KCX77_08315) - 1609238..1610077 (+) 840 WP_106046420.1 gamma-glutamylcyclotransferase -
  KCX77_RS08320 (KCX77_08320) ktrC 1610127..1610792 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  KCX77_RS08325 (KCX77_08325) ade 1610962..1612689 (+) 1728 WP_212064537.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=558627 KCX77_RS08305 WP_003329146.1 1607448..1607726(+) (abrB) [Bacillus atrophaeus strain CNY01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=558627 KCX77_RS08305 WP_003329146.1 1607448..1607726(+) (abrB) [Bacillus atrophaeus strain CNY01]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGCAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAGGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576