Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KCX77_RS07010 Genome accession   NZ_CP073265
Coordinates   1371516..1371941 (+) Length   141 a.a.
NCBI ID   WP_081250945.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1366516..1376941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS06975 (KCX77_06975) - 1366846..1366932 (-) 87 WP_073991391.1 YjcZ family sporulation protein -
  KCX77_RS06980 (KCX77_06980) - 1367924..1368243 (-) 320 Protein_1335 contact-dependent growth inhibition system immunity protein -
  KCX77_RS06985 (KCX77_06985) - 1368232..1368552 (+) 321 WP_212064455.1 putative quinol monooxygenase -
  KCX77_RS06995 (KCX77_06995) - 1369705..1369986 (-) 282 WP_106047291.1 hypothetical protein -
  KCX77_RS07000 (KCX77_07000) - 1370657..1370986 (-) 330 WP_003327517.1 hypothetical protein -
  KCX77_RS07005 (KCX77_07005) - 1371046..1371324 (-) 279 WP_003327515.1 hypothetical protein -
  KCX77_RS07010 (KCX77_07010) nucA/comI 1371516..1371941 (+) 426 WP_081250945.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KCX77_RS07015 (KCX77_07015) - 1372090..1372752 (+) 663 WP_063637522.1 MgtC/SapB family protein -
  KCX77_RS07020 (KCX77_07020) - 1372811..1373050 (-) 240 WP_003327512.1 hypothetical protein -
  KCX77_RS07025 (KCX77_07025) - 1373263..1373475 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  KCX77_RS07030 (KCX77_07030) - 1373535..1373750 (-) 216 WP_081112782.1 spore coat protein -
  KCX77_RS07035 (KCX77_07035) - 1374065..1375465 (+) 1401 WP_212064456.1 polysaccharide deacetylase family protein -
  KCX77_RS07040 (KCX77_07040) - 1375518..1375991 (-) 474 WP_063637839.1 YjfA family protein -
  KCX77_RS07045 (KCX77_07045) - 1376119..1376538 (-) 420 WP_212064457.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15458.32 Da        Isoelectric Point: 4.7462

>NTDB_id=558621 KCX77_RS07010 WP_081250945.1 1371516..1371941(+) (nucA/comI) [Bacillus atrophaeus strain CNY01]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=558621 KCX77_RS07010 WP_081250945.1 1371516..1371941(+) (nucA/comI) [Bacillus atrophaeus strain CNY01]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTCCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532