Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KCX77_RS06195 Genome accession   NZ_CP073265
Coordinates   1225773..1226348 (+) Length   191 a.a.
NCBI ID   WP_010788160.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220773..1231348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS06175 (KCX77_06175) - 1221203..1222501 (-) 1299 WP_212064403.1 globin-coupled sensor protein -
  KCX77_RS06180 (KCX77_06180) - 1222659..1224191 (-) 1533 WP_212064404.1 FAD-dependent oxidoreductase -
  KCX77_RS06185 (KCX77_06185) - 1224325..1225182 (+) 858 WP_212064405.1 SDR family oxidoreductase -
  KCX77_RS06190 (KCX77_06190) - 1225213..1225446 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  KCX77_RS06195 (KCX77_06195) comK 1225773..1226348 (+) 576 WP_010788160.1 competence protein ComK Regulator
  KCX77_RS06200 (KCX77_06200) - 1226566..1226838 (+) 273 WP_063637339.1 excalibur calcium-binding domain-containing protein -
  KCX77_RS06205 (KCX77_06205) - 1226866..1228353 (-) 1488 WP_212064406.1 sodium:solute symporter -
  KCX77_RS06210 (KCX77_06210) - 1228350..1228550 (-) 201 WP_003327692.1 DUF3311 domain-containing protein -
  KCX77_RS06215 (KCX77_06215) - 1228675..1229040 (-) 366 WP_003327690.1 hypothetical protein -
  KCX77_RS06220 (KCX77_06220) - 1229195..1229818 (+) 624 WP_010788162.1 TVP38/TMEM64 family protein -
  KCX77_RS06225 (KCX77_06225) lepB 1229821..1230321 (+) 501 WP_003327688.1 signal peptidase I -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22264.48 Da        Isoelectric Point: 8.1215

>NTDB_id=558612 KCX77_RS06195 WP_010788160.1 1225773..1226348(+) (comK) [Bacillus atrophaeus strain CNY01]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRVEH
APKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 576 bp        

>NTDB_id=558612 KCX77_RS06195 WP_010788160.1 1225773..1226348(+) (comK) [Bacillus atrophaeus strain CNY01]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATATCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGAAAACCAGGTCTACCGCACGGCATGGCTCAGAACAAAATTCCAAGACCGGGTCGAACAC
GCGCCAAAACGGCAGGAATTCATGCTGTACCCGAAGGAAGAACGCACGCGGATGATTTATGATTTTATTTTGCGCGAGCT
GGGCGAGCGGTACTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

87.5

100

0.88