Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2Z43_RS01935 Genome accession   NZ_CP091334
Coordinates   417379..418014 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412379..423014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS01910 (L2Z43_01910) - 413219..414232 (+) 1014 WP_001096107.1 phosphotransferase -
  L2Z43_RS01915 (L2Z43_01915) murU 414232..414921 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L2Z43_RS01920 (L2Z43_01920) rsmG 415009..415641 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L2Z43_RS01925 (L2Z43_01925) - 415663..416445 (+) 783 WP_000057216.1 ParA family protein -
  L2Z43_RS01930 (L2Z43_01930) - 416442..417329 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  L2Z43_RS01935 (L2Z43_01935) exbB 417379..418014 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Z43_RS01940 (L2Z43_01940) - 418030..418458 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  L2Z43_RS01945 (L2Z43_01945) msbA 418455..420182 (+) 1728 WP_001070730.1 lipid A export permease/ATP-binding protein MsbA -
  L2Z43_RS01950 (L2Z43_01950) lpxK 420185..421195 (+) 1011 WP_000050456.1 tetraacyldisaccharide 4'-kinase -
  L2Z43_RS01955 (L2Z43_01955) kdsB 421205..421966 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z43_RS01960 (L2Z43_01960) - 421978..422958 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=558529 L2Z43_RS01935 WP_000264037.1 417379..418014(+) (exbB) [Acinetobacter baumannii strain ATCC19606-VUB]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558529 L2Z43_RS01935 WP_000264037.1 417379..418014(+) (exbB) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393