Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z43_RS01765 Genome accession   NZ_CP091334
Coordinates   381259..383247 (+) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 376259..388247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS01735 (L2Z43_01735) - 376290..376835 (+) 546 WP_001109739.1 GNAT family N-acetyltransferase -
  L2Z43_RS01740 (L2Z43_01740) - 376905..377729 (-) 825 WP_001021777.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-98 -
  L2Z43_RS01745 (L2Z43_01745) - 378128..378688 (+) 561 WP_001050729.1 FxsA family protein -
  L2Z43_RS01750 (L2Z43_01750) - 378752..378937 (-) 186 WP_000192619.1 hypothetical protein -
  L2Z43_RS01755 (L2Z43_01755) - 379196..379444 (+) 249 WP_000966850.1 hypothetical protein -
  L2Z43_RS01760 (L2Z43_01760) metK 379568..380734 (-) 1167 WP_001209544.1 methionine adenosyltransferase -
  L2Z43_RS01765 (L2Z43_01765) recP/tkt 381259..383247 (+) 1989 WP_000211068.1 transketolase Machinery gene
  L2Z43_RS01770 (L2Z43_01770) - 383302..383709 (-) 408 WP_000248285.1 OsmC family protein -
  L2Z43_RS01775 (L2Z43_01775) - 383924..384514 (+) 591 WP_000550331.1 YceI family protein -
  L2Z43_RS01780 (L2Z43_01780) - 384560..385150 (-) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  L2Z43_RS01785 (L2Z43_01785) - 385336..386082 (+) 747 WP_000699313.1 phosphodiester glycosidase family protein -
  L2Z43_RS01790 (L2Z43_01790) - 386118..386348 (-) 231 WP_000011679.1 hypothetical protein -
  L2Z43_RS01795 (L2Z43_01795) trmA 386597..387682 (-) 1086 WP_000204686.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=558528 L2Z43_RS01765 WP_000211068.1 381259..383247(+) (recP/tkt) [Acinetobacter baumannii strain ATCC19606-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=558528 L2Z43_RS01765 WP_000211068.1 381259..383247(+) (recP/tkt) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCATCCTGAATATGG
TTACGCTCCAGGAATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTCACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
TAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCACT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCGGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAGACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTATATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTACACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTGGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCACG
TTGACTACTGGTGGAAGTTTGTTGGTCTGGATGGCAAAGTAATCGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTGAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473