Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z44_RS08055 Genome accession   NZ_CP091333
Coordinates   1710374..1712362 (-) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705374..1717362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS08025 (L2Z44_08025) trmA 1705938..1707023 (+) 1086 WP_075400343.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  L2Z44_RS08030 (L2Z44_08030) - 1707272..1707502 (+) 231 WP_000011679.1 hypothetical protein -
  L2Z44_RS08035 (L2Z44_08035) - 1707538..1708284 (-) 747 WP_075400344.1 phosphodiester glycosidase family protein -
  L2Z44_RS08040 (L2Z44_08040) - 1708471..1709061 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  L2Z44_RS08045 (L2Z44_08045) - 1709107..1709697 (-) 591 WP_000550331.1 YceI family protein -
  L2Z44_RS08050 (L2Z44_08050) - 1709912..1710319 (+) 408 WP_000248284.1 OsmC family protein -
  L2Z44_RS08055 (L2Z44_08055) recP/tkt 1710374..1712362 (-) 1989 WP_000211068.1 transketolase Machinery gene
  L2Z44_RS08060 (L2Z44_08060) metK 1712887..1714053 (+) 1167 WP_001209544.1 methionine adenosyltransferase -
  L2Z44_RS08065 (L2Z44_08065) - 1714177..1714425 (-) 249 WP_000966850.1 hypothetical protein -
  L2Z44_RS08070 (L2Z44_08070) - 1714684..1714869 (+) 186 WP_000192616.1 hypothetical protein -
  L2Z44_RS08075 (L2Z44_08075) - 1714933..1715493 (-) 561 WP_001050729.1 FxsA family protein -
  L2Z44_RS08080 (L2Z44_08080) - 1715892..1716716 (+) 825 WP_001021782.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-65 -
  L2Z44_RS08085 (L2Z44_08085) - 1716786..1717331 (-) 546 WP_075400345.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=558475 L2Z44_RS08055 WP_000211068.1 1710374..1712362(-) (recP/tkt) [Acinetobacter baumannii strain DSM30011-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=558475 L2Z44_RS08055 WP_000211068.1 1710374..1712362(-) (recP/tkt) [Acinetobacter baumannii strain DSM30011-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCATCCTGAATATGG
TTACGCTCCAGGGATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTCACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCACCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCACT
TGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCAGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAAACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTGTATTATGGTGTACGCGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AGCAACGCGTGATTCATGTGTATACACATGACTCAATTGGTTTAGGTGAAGATGGTCCAACACATCAACCAATTGAACAA
ATTGCTTCTTTACGTGGTACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCGATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAGAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGCGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCACG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473