Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2Z44_RS07885 Genome accession   NZ_CP091333
Coordinates   1675604..1676239 (-) Length   211 a.a.
NCBI ID   WP_075400336.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670604..1681239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS07860 (L2Z44_07860) - 1670659..1671639 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  L2Z44_RS07865 (L2Z44_07865) kdsB 1671651..1672412 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z44_RS07870 (L2Z44_07870) lpxK 1672423..1673433 (-) 1011 WP_075400335.1 tetraacyldisaccharide 4'-kinase -
  L2Z44_RS07875 (L2Z44_07875) msbA 1673436..1675163 (-) 1728 WP_004835304.1 lipid A export permease/ATP-binding protein MsbA -
  L2Z44_RS07880 (L2Z44_07880) - 1675160..1675588 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  L2Z44_RS07885 (L2Z44_07885) exbB 1675604..1676239 (-) 636 WP_075400336.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Z44_RS07890 (L2Z44_07890) - 1676289..1677176 (-) 888 WP_075400337.1 ParB/RepB/Spo0J family partition protein -
  L2Z44_RS07895 (L2Z44_07895) - 1677173..1677955 (-) 783 WP_000057212.1 ParA family protein -
  L2Z44_RS07900 (L2Z44_07900) rsmG 1677977..1678609 (-) 633 WP_075400338.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L2Z44_RS07905 (L2Z44_07905) murU 1678697..1679386 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L2Z44_RS07910 (L2Z44_07910) - 1679386..1680399 (-) 1014 WP_031963710.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23226.16 Da        Isoelectric Point: 6.8731

>NTDB_id=558474 L2Z44_RS07885 WP_075400336.1 1675604..1676239(-) (exbB) [Acinetobacter baumannii strain DSM30011-VUB]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVRDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=558474 L2Z44_RS07885 WP_075400336.1 1675604..1676239(-) (exbB) [Acinetobacter baumannii strain DSM30011-VUB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCGAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393