Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   KCV10_RS10000 Genome accession   NZ_CP073243
Coordinates   2120037..2120921 (+) Length   294 a.a.
NCBI ID   WP_004705430.1    Uniprot ID   N8R1G5
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115037..2125921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS09975 - 2115433..2116680 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  KCV10_RS09980 wrbA 2116968..2117561 (+) 594 WP_174740740.1 NAD(P)H:quinone oxidoreductase -
  KCV10_RS09985 - 2117615..2118190 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  KCV10_RS09990 - 2118262..2118975 (-) 714 WP_100193379.1 DUF3108 domain-containing protein -
  KCV10_RS09995 - 2119133..2119804 (-) 672 WP_212510894.1 hypothetical protein -
  KCV10_RS10000 tonB2 2120037..2120921 (+) 885 WP_004705430.1 energy transducer TonB Machinery gene
  KCV10_RS10005 ybeY 2121009..2121488 (-) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  KCV10_RS10010 - 2121765..2122853 (-) 1089 WP_004705435.1 PhoH family protein -
  KCV10_RS10015 miaB 2122891..2124342 (-) 1452 WP_068935662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33577.40 Da        Isoelectric Point: 8.3836

>NTDB_id=558456 KCV10_RS10000 WP_004705430.1 2120037..2120921(+) (tonB2) [Acinetobacter seifertii strain S63-3]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=558456 KCV10_RS10000 WP_004705430.1 2120037..2120921(+) (tonB2) [Acinetobacter seifertii strain S63-3]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTAGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACAACTGATGCTTCGACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R1G5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.898

100

0.949