Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   KCV09_RS14945 Genome accession   NZ_CP073241
Coordinates   3233833..3234351 (-) Length   172 a.a.
NCBI ID   WP_151815461.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3228833..3239351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS14920 - 3229656..3230474 (+) 819 WP_004934917.1 copper resistance protein B -
  KCV09_RS14925 - 3230545..3231486 (+) 942 WP_004934920.1 hypothetical protein -
  KCV09_RS14930 - 3231631..3231948 (+) 318 WP_004934921.1 multidrug efflux SMR transporter -
  KCV09_RS14935 - 3231964..3232410 (-) 447 WP_004934924.1 VOC family protein -
  KCV09_RS14940 - 3232543..3233718 (-) 1176 WP_151815460.1 thiolase family protein -
  KCV09_RS14945 fimT 3233833..3234351 (-) 519 WP_151815461.1 GspH/FimT family pseudopilin Machinery gene
  KCV09_RS14950 omp38 3234738..3235790 (+) 1053 WP_004934932.1 outer membrane protein Omp38 -
  KCV09_RS14955 - 3235875..3236042 (-) 168 WP_004934934.1 hypothetical protein -
  KCV09_RS14960 - 3236183..3237646 (-) 1464 WP_004945517.1 amino acid permease -
  KCV09_RS14965 - 3237656..3238681 (-) 1026 WP_151815653.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19509.32 Da        Isoelectric Point: 8.8372

>NTDB_id=558425 KCV09_RS14945 WP_151815461.1 3233833..3234351(-) (fimT) [Acinetobacter soli strain M3-1-68]
MNNNFLGFSLIEFTVTLTVLSILIGVGVPTYQHVMATQEANHIPRTLTIHIQKAKSDAVLYRHNVVLCPSIDKQTCSDDW
SKGFIVFLDQNRNRQRDLNEDLLSSTDWNTRYGMLSWKGTLQSNHLMFRAASGLPIGSNGSFYYCSQKVSHKRLVISRMG
HFRVETLADCPT

Nucleotide


Download         Length: 519 bp        

>NTDB_id=558425 KCV09_RS14945 WP_151815461.1 3233833..3234351(-) (fimT) [Acinetobacter soli strain M3-1-68]
ATGAATAACAATTTTTTAGGTTTTAGTTTAATTGAATTTACCGTTACCCTCACGGTTTTAAGCATTTTAATTGGTGTCGG
AGTACCGACTTATCAGCATGTTATGGCGACTCAGGAAGCCAACCACATTCCAAGAACACTCACAATTCACATACAAAAAG
CAAAGTCCGATGCGGTGCTGTATCGTCATAACGTTGTGCTCTGCCCGAGTATAGACAAGCAAACCTGTAGCGATGACTGG
AGCAAGGGCTTTATTGTATTTTTAGATCAAAACCGTAACCGGCAGCGAGATCTCAATGAAGATCTGCTATCGAGTACAGA
CTGGAATACCCGTTATGGCATGCTGTCATGGAAAGGCACTTTGCAATCTAACCATTTGATGTTTCGGGCCGCAAGTGGCT
TGCCAATCGGATCAAATGGAAGCTTTTATTATTGTTCGCAAAAAGTCAGTCATAAACGTCTGGTGATCAGCCGCATGGGG
CACTTTCGTGTCGAAACCCTTGCCGATTGCCCAACATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(50-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

63.529

98.837

0.628